Biological Physics

Authors and titles for physics.bio-ph in Nov 2023

[1]  arXiv:2311.00552 [pdf, ps, other]

Title: Evaluation of Induced Transmembrane potential on Membrane Poration through Molecular Dynamics Simulation and Analytical Calculation

Authors: Shadeeb Hossain

Subjects: Biological Physics (physics.bio-ph); Applied Physics (physics.app-ph); Computational Physics (physics.comp-ph)

[2]  arXiv:2311.01649 [pdf, other]

Title: Bind-and-bend model for DNA looping

Authors: Michael Liaofan Liu, Daniel W. Oo, Ryan B. McMillan, Ashley R. Carter

Comments: 27 pages, 13 figures

Subjects: Biological Physics (physics.bio-ph)

[3]  arXiv:2311.01798 [pdf, other]

Title: Passive elasticity properties of $\textit{Octopus rubescens}$ arm

Authors: Udit Halder, Ekaterina Gribkova, Rhanor Gillette, Prashant G. Mehta

Subjects: Biological Physics (physics.bio-ph); Materials Science (cond-mat.mtrl-sci)

[4]  arXiv:2311.02139 [pdf, ps, other]

Title: Broadband ptychographic imaging of biological samples using a deconvolution algorithm

Authors: Huixiang Lin, Fucai Zhang

Comments: 6 pages, 2 figures

Subjects: Biological Physics (physics.bio-ph); Image and Video Processing (eess.IV); Optics (physics.optics)

[5]  arXiv:2311.02654 [pdf, other]

Title: Molecular dynamics simulation analysis of structural dynamic cross correlation induced by odorant hydrogen-bonding in mouse eugenol olfactory receptor

Authors: Chisato Okamoto, Koji Ando

Comments: 6 pages, 8 figures

Journal-ref: Biophys. Physicobio. 21, e210007 (2014)

Subjects: Biological Physics (physics.bio-ph); Chemical Physics (physics.chem-ph)

[6]  arXiv:2311.02810 [pdf, ps, other]

Title: Bending short DNAs as transversely isotropic rings in series

Authors: Chenyu Shi, Meicheng Yao, Bin Chen

Comments: 12 pages, 4 figures

Subjects: Biological Physics (physics.bio-ph)

[7]  arXiv:2311.04677 [pdf, other]

Title: Emergence of homochirality via template-directed ligation in an RNA reactor

Authors: Gabin Laurent, Tobias Göppel, David Lacoste, Ulrich Gerland

Journal-ref: PRX Life 2, 013015 (2024)

Subjects: Biological Physics (physics.bio-ph)

[8]  arXiv:2311.05228 [pdf, ps, other]

Title: Resonant multi-dielectric coverslip for enhanced total internal reflection fluorescence microscopy

Authors: Yousra Toumi (FRESNEL), Anita Mouttou (IRIM), Fabien Lemarchand (FRESNEL), Guillaume Demesy (ATHENA), Cihan Koc (RCMO), Delphine Muriaux (IRIM), Antonin Moreau (FRESNEL), Julien Lumeau (RCMO), Cyril Favard (IRIM), Aude L. Lereu (FRESNEL)

Comments: 2023 23rd International Conference on Transparent Optical Networks (ICTON), Jul 2023, Bucharest, Romania

Subjects: Biological Physics (physics.bio-ph)

[9]  arXiv:2311.05359 [pdf, ps, other]

Title: ITRUSST Consensus on Biophysical Safety for Transcranial Ultrasonic Stimulation

Authors: Jean-Francois Aubry, David Attali, Mark Schafer, Elsa Fouragnan, Charles Caskey, Robert Chen, Ghazaleh Darmani, Ellen J. Bubrick, Jérôme Sallet, Christopher Butler, Charlotte Stagg, Miriam Klein-Flügge, Seung-Schik Yoo, Brad Treeby, Lennart Verhagen, Kim Butts Pauly

Comments: ITRUSST consensus, 11 pages, 1 table, 1 figure

Subjects: Biological Physics (physics.bio-ph); Medical Physics (physics.med-ph)

[10]  arXiv:2311.05948 [pdf, ps, other]

Title: Organization of the bacterial nucleoid by DNA-bridging proteins and globular crowders

Authors: Marc Joyeux (LIPhy)

Journal-ref: Frontiers in Microbiology, 2023, 14

Subjects: Biological Physics (physics.bio-ph)

[11]  arXiv:2311.06208 [pdf, other]

Title: A generic coupling between internal states and activity leads to activation fronts and criticality in active systems

Authors: Hadrien-Matthieu Gascuel, Parisa Rahmani, Richard Bon, Fernando Peruani

Comments: 5 pages, 3 figures

Subjects: Biological Physics (physics.bio-ph)

[12]  arXiv:2311.06457 [pdf, ps, other]

Title: Multicomponent rendezvous of cofilin, profilin and twinfilin at the actin filament barbed end

Authors: Ankita, Sandeep Choubey, Shashank Shekhar

Comments: Primary research paper

Subjects: Biological Physics (physics.bio-ph)

[13]  arXiv:2311.06598 [pdf, other]

Title: Effects of bursty synthesis in organelle biogenesis

Authors: Binayak Banerjee, Dipjyoti Das

Comments: 41 pages, 3 main figures, 4 supplemental figures; Accepted in Mathematical Biosciences

Subjects: Biological Physics (physics.bio-ph); Adaptation and Self-Organizing Systems (nlin.AO)

[14]  arXiv:2311.07057 [pdf, ps, other]

Title: Co-regulation of multi-cellular swirling by individual cellular chirality and boundaries

Authors: Xi Li, Bin Chen

Subjects: Biological Physics (physics.bio-ph)

[15]  arXiv:2311.08645 [pdf, ps, other]

Title: Against negative splitting: the case for alternative pacing strategies for elite marathon athletes in official events

Authors: Guilherme Fernandes, Victor Maldonado

Subjects: Biological Physics (physics.bio-ph)

[16]  arXiv:2311.09092 [pdf, other]

Title: Effects of the local dynamics in the synchronization of neural models

Authors: Bruno R. R. Boaretto

Comments: Thesis presented as a requirement for the degree of Ph.D. in Science in the Graduate Program in Physics, Exact Sciences Sector, of the Universidade Federal do Paran\'a. Advisor: Prof. Dr. Sergio Roberto Lopes

Subjects: Biological Physics (physics.bio-ph)

[17]  arXiv:2311.10602 [pdf, ps, other]

Title: On the nature of screening in charge regulated macroion solutions

Authors: Sunita Kumari, Rudolf Podgornik

Comments: 11 Pages, 5 Figures

Subjects: Biological Physics (physics.bio-ph)

[18]  arXiv:2311.10761 [pdf, other]

Title: Emergence of autopoietic vesicles able to grow, repair and reproduce in a minimalist particle system

Authors: Thomas Cabaret

Subjects: Biological Physics (physics.bio-ph); Adaptation and Self-Organizing Systems (nlin.AO)

[19]  arXiv:2311.11440 [pdf, other]

Title: Microbes in porous environments: From active interactions to emergent feedback

Authors: Chenyu Jin, Anupam Sengupta

Comments: Literature review, 41 pages, 6 figures

Subjects: Biological Physics (physics.bio-ph); Soft Condensed Matter (cond-mat.soft); Fluid Dynamics (physics.flu-dyn)

[20]  arXiv:2311.11839 [pdf, other]

Title: Log-periodic oscillations as real-time signatures of hierarchical dynamics in proteins

Authors: Emanuel Dorbath, Adnan Gulzar, Gerhard Stock

Subjects: Biological Physics (physics.bio-ph)

[21]  arXiv:2311.11950 [pdf, ps, other]

Title: Optical control of spatially localized red blood cell activity by holographic tweezing

Authors: Niccolò Caselli, Mario García-Verdugo, Macarena Calero, Natalia Hernando-Ospina, José Antonio Santiago, Diego Herráez-Aguilar, Francisco Monroy

Comments: 6 figures

Subjects: Biological Physics (physics.bio-ph); Optics (physics.optics)

[22]  arXiv:2311.12025 [pdf, other]

Title: The allosteric lever: towards a principle of specific allosteric response

Authors: Maximilian Vossel, Bert L. de Groot, Aljaž Godec

Subjects: Biological Physics (physics.bio-ph); Soft Condensed Matter (cond-mat.soft); Chemical Physics (physics.chem-ph); Biomolecules (q-bio.BM)

[23]  arXiv:2311.12739 [pdf, other]

Title: Biomechanical Analysis Of Breast Cancer Cells: A Comparative Study Of Invasive And Non-Invasive Cell Lines Using Digital Holographic Microscopy

Authors: Hasan Berkay Abdioglu, Yagmur Isik, Merve Sevgi, Ufuk Gorkem Kirabali, Caner Karaca, Yunus Emre Mert, Defne Dedehayir, Berke Tuna Bostanci, Yasemin Basbinar, Huseyin Uvet

Subjects: Biological Physics (physics.bio-ph)

[24]  arXiv:2311.12787 [pdf, other]

Title: Molecular simulation approaches to probing the effects of mechanical forces in the actin cytoskeleton

Authors: Fatemah Mukadum, Willmor J. Pena Ccoa, Glen M. Hocky

Comments: 14 pages, 4 pages

Subjects: Biological Physics (physics.bio-ph); Statistical Mechanics (cond-mat.stat-mech)

[25]  arXiv:2311.13232 [pdf, ps, other]

Title: Ecosystem transformations in response to environmental fluctuations

Authors: Ikumi Kobayashi

Comments: 9 pages, 4 figures

Subjects: Biological Physics (physics.bio-ph); Statistical Mechanics (cond-mat.stat-mech)