Biomolecules

Authors and titles for recent submissions

[ total of 10 entries: 1-10 ]
[ showing up to 25 entries per page: fewer | more ]

[1] arXiv:2404.12141 [pdf, other]: Title: MolCRAFT: Structure-Based Drug Design in Continuous Parameter Space

Authors: Yanru Qu, Keyue Qiu, Yuxuan Song, Jingjing Gong, Jiawei Han, Mingyue Zheng, Hao Zhou, Wei-Ying Ma

Comments: 19 pages, 11 figures

Subjects: Biomolecules (q-bio.BM); Machine Learning (cs.LG)
[2] arXiv:2404.12029 (cross-list from q-bio.QM) [pdf, other]: Title: KnotResolver: Tracking self-intersecting filaments in microscopy using directed graphs

Authors: Dhruv Khatri, Shivani A. Yadav, Chaitanya A. Athale

Comments: Manuscript in submission

Subjects: Quantitative Methods (q-bio.QM); Biological Physics (physics.bio-ph); Biomolecules (q-bio.BM)
[3] arXiv:2404.10573 (cross-list from cs.AI) [pdf, other]: Title: AAVDiff: Experimental Validation of Enhanced Viability and Diversity in Recombinant Adeno-Associated Virus (AAV) Capsids through Diffusion Generation

Authors: Lijun Liu, Jiali Yang, Jianfei Song, Xinglin Yang, Lele Niu, Zeqi Cai, Hui Shi, Tingjun Hou, Chang-yu Hsieh, Weiran Shen, Yafeng Deng

Subjects: Artificial Intelligence (cs.AI); Computational Engineering, Finance, and Science (cs.CE); Biomolecules (q-bio.BM)

[4] arXiv:2404.11199 [pdf, other]: Title: RiboDiffusion: Tertiary Structure-based RNA Inverse Folding with Generative Diffusion Models

Authors: Han Huang, Ziqian Lin, Dongchen He, Liang Hong, Yu Li

Comments: 15 pages

Subjects: Biomolecules (q-bio.BM)
[5] arXiv:2404.11374 (cross-list from cs.LG) [pdf, other]: Title: Tensor Factorisation for Polypharmacy Side Effect Prediction

Authors: Oliver Lloyd, Yi Liu, Tom R. Gaunt

Subjects: Machine Learning (cs.LG); Biomolecules (q-bio.BM)

[6] arXiv:2404.10260 [pdf, other]: Title: HelixFold-Multimer: Elevating Protein Complex Structure Prediction to New Heights

Authors: Xiaomin Fang, Jie Gao, Jing Hu, Lihang Liu, Yang Xue, Xiaonan Zhang, Kunrui Zhu

Subjects: Biomolecules (q-bio.BM); Artificial Intelligence (cs.AI)
[7] arXiv:2404.10178 [pdf, other]: Title: CryoMAE: Few-Shot Cryo-EM Particle Picking with Masked Autoencoders

Authors: Chentianye Xu, Xueying Zhan, Min Xu

Subjects: Biomolecules (q-bio.BM); Computer Vision and Pattern Recognition (cs.CV)

[8] arXiv:2404.09738 [pdf, ps, other]: Title: AMPCliff: quantitative definition and benchmarking of activity cliffs in antimicrobial peptides

Authors: Kewei Li, Yuqian Wu, Yutong Guo, Yinheng Li, Yusi Fan, Ruochi Zhang, Lan Huang, Fengfeng Zhou

Subjects: Biomolecules (q-bio.BM); Artificial Intelligence (cs.AI); Quantitative Methods (q-bio.QM)
[9] arXiv:2404.08711 (cross-list from q-bio.QM) [pdf, ps, other]: Title: Drug Repurposing for Parkinson's Disease Using Random Walk With Restart Algorithm and the Parkinson's Disease Ontology Database

Authors: Pratham Kankariya, Rachita Rode, Kevin Mudaliar, Prof. Pranali Hatode

Comments: 5 pages, Final Year Engineering Project on Machine Learning and Healthcare Industry

Subjects: Quantitative Methods (q-bio.QM); Machine Learning (cs.LG); Biomolecules (q-bio.BM)

[10] arXiv:2404.08108 (cross-list from cs.LG) [pdf, ps, other]: Title: Protein intrinsic disorder prediction using Attention U-Net and ProtTrans protein language model

Authors: Krzysztof Kotowski, Irena Roterman, Katarzyna Stapor

Comments: 11 pages, 8 figures, 2 tables, submitted to Journal of Chemical Information and Modeling

Subjects: Machine Learning (cs.LG); Biomolecules (q-bio.BM)

[ total of 10 entries: 1-10 ]
[ showing up to 25 entries per page: fewer | more ]