Populations and Evolution

Authors and titles for q-bio.PE in Feb 2023

[1]  arXiv:2302.00582 [pdf, ps, other]

Title: Habitat transition in the evolution of bacteria and archaea

Authors: Alexander L. Jaffe, Cindy J. Castelle, Jillian F. Banfield

Comments: Accepted for publication in the Annual Review of Microbiology, Volume 77

Subjects: Populations and Evolution (q-bio.PE); Genomics (q-bio.GN)

[2]  arXiv:2302.00767 [pdf, other]

Title: ImageNomer: description of a functional connectivity and omics analysis tool and case study identifying a race confound

Authors: Anton Orlichenko, Grant Daly, Ziyu Zhou, Anqi Liu, Hui Shen, Hong-Wen Deng, Yu-Ping Wang

Comments: 11 pages

Subjects: Populations and Evolution (q-bio.PE); Machine Learning (cs.LG); Neurons and Cognition (q-bio.NC)

[3]  arXiv:2302.00826 [pdf, ps, other]

Title: Existence of exact solution of the Susceptible-Exposed-Infectious-Recovered (SEIR) epidemic model

Authors: Norio Yoshida

Comments: 40 pages, 9 figures

Journal-ref: J. Differential Equations 355(2023), 103-143

Subjects: Populations and Evolution (q-bio.PE)

[4]  arXiv:2302.00960 [pdf, other]

Title: Quantifying optimal resource allocation strategies for controlling epidemics

Authors: Biplab Maity, Swarnendu Banerjee, Abhishek Senapati, Joydev Chattopadhyay

Comments: 44 Pages, 10 Figures

Subjects: Populations and Evolution (q-bio.PE)

[5]  arXiv:2302.01076 [pdf, other]

Title: Convergence to the Equilibrium State in an Outbreak: When Can Growth Rates Accurately be Measured?

Authors: Adam Mielke, Lasse Engbo Christiansen

Comments: 4 pages, 1 figure

Subjects: Populations and Evolution (q-bio.PE)

[6]  arXiv:2302.02018 [pdf, other]

Title: Hierarchical Model with Allee Effect, Immigration, and Holling Type II Functional Response

Authors: Eddy Kwessi

Subjects: Populations and Evolution (q-bio.PE); Dynamical Systems (math.DS)

[7]  arXiv:2302.02263 [pdf, other]

Title: Vaccination in a two-strain model with cross-immunity and antibody-dependent enhancement

Authors: Lorena C. Bulhosa, Juliane F. Oliveira

Comments: Corrected typos. Revised figures, results unchanged

Subjects: Populations and Evolution (q-bio.PE)

[8]  arXiv:2302.02522 [pdf, other]

Title: Prior Density Learning in Variational Bayesian Phylogenetic Parameters Inference

Authors: Amine M. Remita, Golrokh Vitae, Abdoulaye Baniré Diallo

Comments: Accepted as a full paper for publication at RECOMB-CG 2023 (LNBI proof version). 15 pages (excluding references), 6 tables and 1 figure

Journal-ref: In Jahn, K., Vina\v{r}, T. (eds) Comparative Genomics. RECOMB-CG 2023. Lecture Notes in Computer Science, vol 13883. Springer, Cham

Subjects: Populations and Evolution (q-bio.PE); Machine Learning (cs.LG)

[9]  arXiv:2302.02812 [pdf, other]

Title: Simulation algorithms for Markovian and non-Markovian epidemics

Authors: Guohao Dou

Subjects: Populations and Evolution (q-bio.PE); Multiagent Systems (cs.MA); Biological Physics (physics.bio-ph)

[10]  arXiv:2302.03210 [pdf, other]

Title: Temporal and probabilistic comparisons of epidemic interventions

Authors: Mariah C. Boudreau, Andrea J. Allen, Nicholas J. Roberts, Antoine Allard, Laurent Hébert-Dufresne

Comments: 20 pages, 5 figures

Journal-ref: Bull. of Math. Biol. 85(2023)118

Subjects: Populations and Evolution (q-bio.PE)

[11]  arXiv:2302.03449 [pdf, other]

Title: Turing patterns in a Leslie-Gower predator prey model

Authors: Florinda Capone, Roberta De Luca, Isabella Torcicollo

Subjects: Populations and Evolution (q-bio.PE); Mathematical Physics (math-ph)

[12]  arXiv:2302.03471 [pdf, ps, other]

Title: How a simple chloroplast psbA gene mutation changed world agriculture

Authors: Jack Dekker

Subjects: Populations and Evolution (q-bio.PE)

[13]  arXiv:2302.04223 [pdf, other]

Title: On the redundancy of birth and death rates in homogenous epidemic SIR models

Authors: Florian Nill

Comments: 9 pages, 3 figures, 2 tables. arXiv admin note: text overlap with arXiv:2301.00159

Journal-ref: Fractal Fract. 2023, 7, 313

Subjects: Populations and Evolution (q-bio.PE); Dynamical Systems (math.DS)

[14]  arXiv:2302.04594 [pdf, ps, other]

Title: Ecological system with fear induced group defence and prey refuge

Authors: Shivam Yadav, Jai Prakash Tripathi, Shrichand Bhuria, Satish Kumar Tiwari, Deepak Tripathi, Vandana Tiwari, Ranjit Kumar Upadhyay, Yun Kang

Subjects: Populations and Evolution (q-bio.PE)

[15]  arXiv:2302.06261 [pdf, other]

Title: An Algebraic Discussion of Bisexual Populations with Wolbachia Infection I: Discrete Dynamical System Approach

Authors: Barış Özdinç, Songül Esin, Müge Kanuni

Comments: 17 pages, 11 figures

Subjects: Populations and Evolution (q-bio.PE)

[16]  arXiv:2302.06573 [pdf, ps, other]

Title: Propagation of weakly advantageous mutations in cancer cell population

Authors: Andrzej Polanski, Mateusz Kania, Jarosław Gil, Wojciech Łabaj, Ewa Lach, Agnieszka Szczęsna

Comments: Removed Figure 6, corrections

Subjects: Populations and Evolution (q-bio.PE); Numerical Analysis (math.NA)

[17]  arXiv:2302.07820 [pdf, other]

Title: Equilibria of large random Lotka-Volterra systems with vanishing species: a mathematical approach

Authors: Imane Akjouj, Walid Hachem, Mylène Maïda, Jamal Najim

Subjects: Populations and Evolution (q-bio.PE); Probability (math.PR)

[18]  arXiv:2302.07955 [src]

Title: Mathematical models for order of mutation problem in myeloproliferative neoplasm: non-additivity and non-commutativity

Authors: Yue Wang

Comments: Highly incomplete work that needs extensive revision

Subjects: Populations and Evolution (q-bio.PE); Molecular Networks (q-bio.MN)

[19]  arXiv:2302.08071 [pdf, other]

Title: Statistical Theory of Asymmetric Damage Segregation in Clonal Cell Populations

Authors: Arkady Pikovsky, Lev S. Tsimring

Comments: Mathematical Biosciences, 2023 (in press)

Subjects: Populations and Evolution (q-bio.PE); Adaptation and Self-Organizing Systems (nlin.AO); Biological Physics (physics.bio-ph)

[20]  arXiv:2302.08695 [pdf, other]

Title: A Countable-Type Branching Process Model for the Tug-of-War Cancer Cell Dynamics

Authors: Ren-Yi Wang, Marek Kimmel

Subjects: Populations and Evolution (q-bio.PE); Probability (math.PR)

[21]  arXiv:2302.09076 [pdf, ps, other]

Title: Nowcasting the 2022 mpox outbreak in England

Authors: Christopher E. Overton, Sam Abbott, Rachel Christie, Fergus Cumming, Julie Day, Owen Jones, Rob Paton, Charlie Turner, Thomas Ward

Subjects: Populations and Evolution (q-bio.PE)

[22]  arXiv:2302.09402 [pdf, other]

Title: CRP-Tree: A phylogenetic association test for binary traits

Authors: Julie Zhang, Gabriel A. Preising, Molly Schumer, Julia A. Palacios

Comments: 40 pages, 23 figures

Subjects: Populations and Evolution (q-bio.PE); Applications (stat.AP)

[23]  arXiv:2302.10015 [pdf, ps, other]

Title: Comparison of orchard networks using their extended $μ$-representation

Authors: Gabriel Cardona, Joan Carles Pons, Gerard Ribas, Tomás Martínez Coronado

Subjects: Populations and Evolution (q-bio.PE); Discrete Mathematics (cs.DM)

[24]  arXiv:2302.11438 [pdf, ps, other]

Title: On the scope of applicability of the models of Darwinian dynamics

Authors: Georgiy Karev

Comments: 39 pages, 11 figures

Subjects: Populations and Evolution (q-bio.PE)

[25]  arXiv:2302.12381 [pdf, other]

Title: Optimal interruption of P. vivax malaria transmission using mass drug administration

Authors: Md Nurul Anwar, Roslyn I. Hickson, Somya Mehra, David J. Price, James M. McCaw, Mark B. Flegg, Jennifer A. Flegg

Comments: 39 pages, 14 figures

Subjects: Populations and Evolution (q-bio.PE)