Populations and Evolution

Authors and titles for q-bio.PE in Mar 2024, skipping first 25

[26]  arXiv:2403.15842 [pdf, other]

Title: Phylogenetic diversity indices from an affine and projective viewpoint

Authors: Vincent Moulton, Andreas Spillner, Kristina Wicke

Comments: 23 pages, 11 figures

Subjects: Populations and Evolution (q-bio.PE); Combinatorics (math.CO)

[27]  arXiv:2403.16290 [pdf, other]

Title: An Information Theory Treatment of Animal Movement Tracks

Authors: Wayne M Getz

Comments: 21 pages, 2 tables, 1 figure

Subjects: Populations and Evolution (q-bio.PE); Information Theory (cs.IT)

[28]  arXiv:2403.17446 [pdf, ps, other]

Title: Cost-benefit analysis of ecosystem modelling to support fisheries management

Authors: Matthew H. Holden, Eva E. Plagányi, Elizabeth A. Fulton, Alexander B. Campbell, Rachel Janes, Robyn A. Lovett, Montana Wickens, Matthew P. Adams, Larissa Lubiana Botelho, Catherine M. Dichmont, Philip Erm, Kate J Helmstedt, Ryan F. Heneghan, Manuela Mendiolar, Anthony J. Richardson, Jacob G. D. Rogers, Kate Saunders, Liam Timms

Subjects: Populations and Evolution (q-bio.PE)

[29]  arXiv:2403.18614 [pdf, other]

Title: Energy-ordered resource stratification as an agnostic signature of life

Authors: Akshit Goyal, Mikhail Tikhonov

Comments: 5 pages, 3 figures

Subjects: Populations and Evolution (q-bio.PE); Biological Physics (physics.bio-ph)

[30]  arXiv:2403.19372 [pdf, other]

Title: Emergent predictability in microbial ecosystems

Authors: Jacob Moran, Mikhail Tikhonov

Comments: 9 pages, 5 figures

Subjects: Populations and Evolution (q-bio.PE)

[31]  arXiv:2403.03000 (cross-list from q-bio.QM) [pdf, ps, other]

Title: Possible and Impossible Inferences From Reconstructed Evolutionary Processes using Phylogenies as an Example

Authors: Niklas Hohmann

Subjects: Quantitative Methods (q-bio.QM); Populations and Evolution (q-bio.PE)

[32]  arXiv:2403.09436 (cross-list from q-bio.BM) [pdf, other]

Title: Emergent time scales of epistasis in protein evolution

Authors: Leonardo Di Bari, Matteo Bisardi, Sabrina Cotogno, Martin Weigt, Francesco Zamponi

Comments: 24 pages, 12 figures - minor error in v1 has been corrected

Subjects: Biomolecules (q-bio.BM); Disordered Systems and Neural Networks (cond-mat.dis-nn); Populations and Evolution (q-bio.PE)

[33]  arXiv:2403.00246 (cross-list from cs.DS) [pdf, ps, other]

Title: Analysis of Phylogeny Tracking Algorithms for Serial and Multiprocess Applications

Authors: Matthew Andres Moreno, Santiago Rodriguez Papa, Emily Dolson

Subjects: Data Structures and Algorithms (cs.DS); Populations and Evolution (q-bio.PE)

[34]  arXiv:2403.01667 (cross-list from nlin.PS) [pdf, other]

Title: Fisher-KPP-type models of biological invasion: Open source computational tools, key concepts and analysis

Authors: Matthew J Simpson, Scott W McCue

Comments: 55 Pages, 14 Figures

Subjects: Pattern Formation and Solitons (nlin.PS); Populations and Evolution (q-bio.PE)

[35]  arXiv:2403.03948 (cross-list from stat.ME) [pdf, other]

Title: Estimating the household secondary attack rate with the Incomplete Chain Binomial model

Authors: Jonas Christoffer Lindstrøm, Terese Bekkevold, Cathinka Halle Julin, Anna Hayman Robertson, Lisbeth Meyer Næss

Comments: 16 pages

Subjects: Methodology (stat.ME); Physics and Society (physics.soc-ph); Populations and Evolution (q-bio.PE)

[36]  arXiv:2403.04044 (cross-list from nlin.AO) [pdf, ps, other]

Title: A Swarm Coherence Mechanism for Jellyfish

Authors: Erik Gengel, Zafrir Kuplik, Dror Angel, Eyal Heifetz

Subjects: Adaptation and Self-Organizing Systems (nlin.AO); Soft Condensed Matter (cond-mat.soft); Pattern Formation and Solitons (nlin.PS); Populations and Evolution (q-bio.PE)

[37]  arXiv:2403.04505 (cross-list from nlin.AO) [pdf, other]

Title: The importance of the incubation time distribution in compartmental epidemiological models

Authors: Eric Rozan, Marcelo N Kuperman, Sebastian Bouzat

Subjects: Adaptation and Self-Organizing Systems (nlin.AO); Populations and Evolution (q-bio.PE)

[38]  arXiv:2403.04552 (cross-list from math.DS) [pdf, ps, other]

Title: Analysis of a Leslie-Gower model with Alle effects, cooperative hunting, and constant placement rates

Authors: Yonghui Zhao

Subjects: Dynamical Systems (math.DS); Populations and Evolution (q-bio.PE)

[39]  arXiv:2403.05859 (cross-list from physics.soc-ph) [pdf, other]

Title: Confirmation of the centrality of the Huanan market among early COVID-19 cases

Authors: Florence Débarre, Michael Worobey

Comments: Reply to Stoyan and Chiu (arXiv:2208.10106)

Subjects: Physics and Society (physics.soc-ph); Populations and Evolution (q-bio.PE)

[40]  arXiv:2403.06893 (cross-list from physics.soc-ph) [pdf, ps, other]

Title: Partner selection and evolution of out-group avoidance

Authors: Hirofumi Takesue

Comments: 10 pages, 5 figures; (supplementary materials: 4 pages, 4 figures)

Subjects: Physics and Society (physics.soc-ph); Populations and Evolution (q-bio.PE)

[41]  arXiv:2403.07881 (cross-list from physics.soc-ph) [pdf, ps, other]

Title: Epidemic modelling requires knowledge of the social network

Authors: Samuel Johnson

Comments: This is the Accepted Manuscript version of an article accepted for publication in Journal of Physics: Complexity. IOP Publishing Ltd is not responsible for any errors or omissions in this version or any version derived from it. This Accepted Manuscript is published under a CC BY licence. The Version of Record is available online at: this https URL

Journal-ref: J. Phys. Complex. 5 (2024) 01LT01

Subjects: Physics and Society (physics.soc-ph); Social and Information Networks (cs.SI); Adaptation and Self-Organizing Systems (nlin.AO); Populations and Evolution (q-bio.PE)

[42]  arXiv:2403.07971 (cross-list from physics.soc-ph) [pdf, other]

Title: Evaluating the Impact of Vaccine Hesitancy on the Allocation of Vital Resources During COVID-19 Pandemic

Authors: Hieu Bui, Sandra Eksioglu, Ruben Proano

Comments: Proceedings of the IISE Annual Conference & Expo 2024

Subjects: Physics and Society (physics.soc-ph); Optimization and Control (math.OC); Populations and Evolution (q-bio.PE)

[43]  arXiv:2403.08744 (cross-list from physics.bio-ph) [pdf, ps, other]

Title: GTP before ATP: The energy currency at the origin of genes

Authors: Natalia Mrnjavac, William F. Martin

Comments: 27 pages, 5 figures, 2 tables

Subjects: Biological Physics (physics.bio-ph); Biomolecules (q-bio.BM); Populations and Evolution (q-bio.PE)

[44]  arXiv:2403.08882 (cross-list from cs.MA) [pdf, other]

Title: Cultural evolution in populations of Large Language Models

Authors: Jérémy Perez, Corentin Léger, Marcela Ovando-Tellez, Chris Foulon, Joan Dussauld, Pierre-Yves Oudeyer, Clément Moulin-Frier

Comments: 17 pages, 20 figures. Open-source code available at this https URL

Subjects: Multiagent Systems (cs.MA); Artificial Intelligence (cs.AI); Populations and Evolution (q-bio.PE)

[45]  arXiv:2403.11014 (cross-list from cond-mat.stat-mech) [pdf, other]

Title: Beyond May: Complexity-stability relationships in disordered dynamical systems

Authors: Onofrio Mazzarisi, Matteo Smerlak

Comments: 5 pages, 3 figures

Subjects: Statistical Mechanics (cond-mat.stat-mech); Disordered Systems and Neural Networks (cond-mat.dis-nn); Populations and Evolution (q-bio.PE)

[46]  arXiv:2403.12598 (cross-list from math.PR) [pdf, other]

Title: Invariance of fixation probability in Moran-like Processes on graphs

Authors: Peter Keller, Mert Ugurlu

Comments: 12 pages, 3 figures

Subjects: Probability (math.PR); Populations and Evolution (q-bio.PE)

[47]  arXiv:2403.12858 (cross-list from stat.AP) [pdf, other]

Title: Settlement Mapping for Population Density Modelling in Disease Risk Spatial Analysis

Authors: Mirza Alim Mutasodirin, Rafi Dwi Rizqullah, Andie Setiyoko, Aniati Murni Arymurthy

Comments: The 6th International Workshop on Big Data and Information Security (IWBIS 2021)

Subjects: Applications (stat.AP); Populations and Evolution (q-bio.PE); Quantitative Methods (q-bio.QM); Methodology (stat.ME)

[48]  arXiv:2403.13081 (cross-list from stat.AP) [pdf, other]

Title: Parameter Estimation from Single Patient, Single Time-Point Sequencing Data of Recurrent Tumors

Authors: Kevin Leder, Ruping Sun, Zicheng Wang, Xuanming Zhang

Subjects: Applications (stat.AP); Probability (math.PR); Populations and Evolution (q-bio.PE)

[49]  arXiv:2403.13874 (cross-list from math.PR) [pdf, ps, other]

Title: Can a rudderless species survive?

Authors: Rinaldo B. Schinazi

Subjects: Probability (math.PR); Populations and Evolution (q-bio.PE)

[50]  arXiv:2403.14195 (cross-list from astro-ph.EP) [pdf, other]

Title: An Agnostic Biosignature Based on Modeling Panspermia and Terraformation

Authors: Harrison B. Smith, Lana Sinapayen

Comments: 16 pages, 20 figures

Subjects: Earth and Planetary Astrophysics (astro-ph.EP); Instrumentation and Methods for Astrophysics (astro-ph.IM); Populations and Evolution (q-bio.PE); Quantitative Methods (q-bio.QM)