Quantitative Biology

Authors and titles for Feb 2023, skipping first 250

[251]  arXiv:2302.13271 (cross-list from cs.LG) [pdf, other]

Title: Direct Estimation of Parameters in ODE Models Using WENDy: Weak-form Estimation of Nonlinear Dynamics

Authors: David M. Bortz, Daniel A. Messenger, Vanja Dukic

Comments: 28 pages, 16 figures

Subjects: Machine Learning (cs.LG); Dynamical Systems (math.DS); Quantitative Methods (q-bio.QM); Methodology (stat.ME)

[252]  arXiv:2302.13358 (cross-list from physics.soc-ph) [pdf, other]

Title: Nonlinear bias toward complex contagion in uncertain transmission settings

Authors: Guillaume St-Onge, Laurent Hébert-Dufresne, Antoine Allard

Comments: 19 pages, 5 figures

Journal-ref: Proc. Natl. Acad. Sci. U.S.A., 121, e2312202121 (2023)

Subjects: Physics and Society (physics.soc-ph); Populations and Evolution (q-bio.PE)

[253]  arXiv:2302.13385 (cross-list from math.PR) [pdf, other]

Title: Individual based SIS models on (not so) dense large random networks

Authors: Jean-François Delmas, Paolo Frasca, Federica Garin, Viet Chi Tran, Aurélien Velleret, Pierre-André Zitt

Comments: Acknowledgments: This work was financed by the Labex B\'ezout (ANR-10-LABX-58) and the COCOON grant (ANR-22-CE48-0011), and by the platform MODCOV19 of the National Institute of Mathematical Sciences and their Interactions of CNRS. 32 pages, including an appendix of 6 pages

Subjects: Probability (math.PR); Populations and Evolution (q-bio.PE)

[254]  arXiv:2302.13631 (cross-list from eess.IV) [pdf, ps, other]

Title: Curriculum Based Multi-Task Learning for Parkinson's Disease Detection

Authors: Nikhil J. Dhinagar, Conor Owens-Walton, Emily Laltoo, Christina P. Boyle, Yao-Liang Chen, Philip Cook, Corey McMillan, Chih-Chien Tsai, J-J Wang, Yih-Ru Wu, Ysbrand van der Werf, Paul M. Thompson

Comments: Accepted for publication at the 20th IEEE International Symposium on Biomedical Imaging, ISBI 2023

Subjects: Image and Video Processing (eess.IV); Artificial Intelligence (cs.AI); Computer Vision and Pattern Recognition (cs.CV); Machine Learning (cs.LG); Quantitative Methods (q-bio.QM)

[255]  arXiv:2302.13693 (cross-list from cs.LG) [pdf, other]

Title: Learning Topology-Specific Experts for Molecular Property Prediction

Authors: Su Kim, Dongha Lee, SeongKu Kang, Seonghyeon Lee, Hwanjo Yu

Comments: 11 pages with 8 figures

Journal-ref: The 37th AAAI conference on artificial intelligence (AAAI 2023)

Subjects: Machine Learning (cs.LG); Quantitative Methods (q-bio.QM)

[256]  arXiv:2302.13711 (cross-list from cs.LG) [pdf, other]

Title: Internal-Coordinate Density Modelling of Protein Structure: Covariance Matters

Authors: Marloes Arts, Jes Frellsen, Wouter Boomsma

Comments: Pages: 10 main, 3 references, 8 appendix. Figures: 5 main, 6 appendix

Subjects: Machine Learning (cs.LG); Biomolecules (q-bio.BM)

[257]  arXiv:2302.14841 (cross-list from math.DS) [pdf, other]

Title: Competencia y Depredación: el Arribo de una Especie Exótica al Medio

Authors: Alvaro Reyes-García

Comments: PhD thesis, in Spanish language

Subjects: Dynamical Systems (math.DS); Populations and Evolution (q-bio.PE)