Quantitative Biology

Authors and titles for Mar 2023, skipping first 325

[326]  arXiv:2303.16417 (cross-list from cs.CV) [pdf, ps, other]

Title: Problems and shortcuts in deep learning for screening mammography

Authors: Trevor Tsue, Brent Mombourquette, Ahmed Taha, Thomas Paul Matthews, Yen Nhi Truong Vu, Jason Su

Subjects: Computer Vision and Pattern Recognition (cs.CV); Machine Learning (cs.LG); Quantitative Methods (q-bio.QM)

[327]  arXiv:2303.16452 (cross-list from cs.LG) [pdf, other]

Title: ProtFIM: Fill-in-Middle Protein Sequence Design via Protein Language Models

Authors: Youhan Lee, Hasun Yu

Comments: Preprint

Subjects: Machine Learning (cs.LG); Artificial Intelligence (cs.AI); Biomolecules (q-bio.BM)

[328]  arXiv:2303.16644 (cross-list from physics.soc-ph) [pdf, other]

Title: Policy lessons from the Italian pandemic of Covid-19

Authors: José M. Carcione, Jing Ba

Subjects: Physics and Society (physics.soc-ph); Populations and Evolution (q-bio.PE)

[329]  arXiv:2303.16698 (cross-list from cs.LG) [pdf, other]

Title: Probabilistic inverse optimal control for non-linear partially observable systems disentangles perceptual uncertainty and behavioral costs

Authors: Dominik Straub, Matthias Schultheis, Heinz Koeppl, Constantin A. Rothkopf

Subjects: Machine Learning (cs.LG); Systems and Control (eess.SY); Optimization and Control (math.OC); Neurons and Cognition (q-bio.NC); Machine Learning (stat.ML)

[330]  arXiv:2303.17281 (cross-list from physics.bio-ph) [pdf, other]

Title: Scaling properties of RNA as a randomly branching polymer

Authors: Domen Vaupotič, Angelo Rosa, Luca Tubiana, Anže Božič

Comments: 13 pages, 4 figures; 10 pages and 8 figures of supplementary material

Journal-ref: J. Chem. Phys. 158, 234901 (2023)

Subjects: Biological Physics (physics.bio-ph); Soft Condensed Matter (cond-mat.soft); Biomolecules (q-bio.BM)

[331]  arXiv:2303.17332 (cross-list from math.DS) [pdf, other]

Title: Clusters of African countries based on the social contacts and associated socioeconomic indicators relevant to the spread of the epidemic

Authors: Evans Kiptoo Korir, Zsolt Vizi

Subjects: Dynamical Systems (math.DS); Quantitative Methods (q-bio.QM)

[332]  arXiv:2303.17403 (cross-list from cond-mat.stat-mech) [pdf, other]

Title: Matrix Product Belief Propagation for reweighted stochastic dynamics over graphs

Authors: Stefano Crotti, Alfredo Braunstein

Comments: 22 pages, 7 figures, 1 table, appendix

Journal-ref: PNAS, 120 (47) e2307935120 (2023)

Subjects: Statistical Mechanics (cond-mat.stat-mech); Social and Information Networks (cs.SI); Populations and Evolution (q-bio.PE)

[333]  arXiv:2303.17508 (cross-list from cs.AI) [pdf, other]

Title: Learning in Factored Domains with Information-Constrained Visual Representations

Authors: Tyler Malloy, Miao Liu, Matthew D. Riemer, Tim Klinger, Gerald Tesauro, Chris R. Sims

Subjects: Artificial Intelligence (cs.AI); Computer Vision and Pattern Recognition (cs.CV); Human-Computer Interaction (cs.HC); Neurons and Cognition (q-bio.NC)

[334]  arXiv:2303.17589 (cross-list from cs.LG) [pdf, other]

Title: Polarity is all you need to learn and transfer faster

Authors: Qingyang Wang, Michael A.Powell, Ali Geisa, Eric W. Bridgeford, Joshua T. Vogelstein

Comments: ICML camera-ready

Subjects: Machine Learning (cs.LG); Computer Vision and Pattern Recognition (cs.CV); Neural and Evolutionary Computing (cs.NE); Neurons and Cognition (q-bio.NC)

[335]  arXiv:2303.17670 (cross-list from cs.CY) [pdf, other]

Title: Utilizing Remote Sensing to Analyze Land Usage and Rice Planting Patterns

Authors: Nicholas Milikich

Subjects: Computers and Society (cs.CY); Artificial Intelligence (cs.AI); Populations and Evolution (q-bio.PE)

[336]  arXiv:2303.17706 (cross-list from eess.IV) [pdf, other]

Title: Label Propagation via Random Walk for Training Robust Thalamus Nuclei Parcellation Model from Noisy Annotations

Authors: Anqi Feng, Yuan Xue, Yuli Wang, Chang Yan, Zhangxing Bian, Muhan Shao, Jiachen Zhuo, Rao P. Gullapalli, Aaron Carass, Jerry L. Prince

Subjects: Image and Video Processing (eess.IV); Quantitative Methods (q-bio.QM)

[337]  arXiv:2303.17762 (cross-list from cs.IT) [pdf, other]

Title: Generalized Information Bottleneck for Gaussian Variables

Authors: Vudtiwat Ngampruetikorn, David J. Schwab

Comments: 7 pages, 3 figures

Subjects: Information Theory (cs.IT); Statistical Mechanics (cond-mat.stat-mech); Machine Learning (cs.LG); Data Analysis, Statistics and Probability (physics.data-an); Quantitative Methods (q-bio.QM)

[338]  arXiv:2303.17785 (cross-list from cond-mat.soft) [pdf, other]

Title: Measuring response functions of active materials from data

Authors: Mehdi Molaei, Steven A. Redford, Wen-hung Chou, Danielle Scheff, Juan J. de Pablo, Patrick W. Oakes, Margaret L. Gardel

Subjects: Soft Condensed Matter (cond-mat.soft); Quantitative Methods (q-bio.QM)

[339]  arXiv:2303.18239 (cross-list from math.PR) [pdf, other]

Title: Well-posedness results for a new class of stochastic spatio-temporal SIR-type models driven by proportional pure-jump Lévy noise

Authors: Mohamed Mehdaoui

Journal-ref: Applied Mathematical Modelling Volume 126, February 2024, Pages 543-567

Subjects: Probability (math.PR); Dynamical Systems (math.DS); Physics and Society (physics.soc-ph); Populations and Evolution (q-bio.PE)