Quantitative Biology

Authors and titles for Mar 2023, skipping first 50

[51]  arXiv:2303.04467 [pdf, ps, other]

Title: The evolution of cooperation and diversity by integrated indirect reciprocity

Authors: Tatsuya Sasaki, Satoshi Uchida, Isamu Okada, Hitoshi Yamamoto

Comments: 14 pages, 4 figures, 2 tables

Journal-ref: Games 2024, 15(2),15

Subjects: Populations and Evolution (q-bio.PE); Computers and Society (cs.CY); Adaptation and Self-Organizing Systems (nlin.AO); Physics and Society (physics.soc-ph)

[52]  arXiv:2303.04490 [pdf, other]

Title: From localized to well-mixed: How commuter interactions shape disease spread

Authors: Aaron Winn, Adam Konkol, Eleni Katifori

Comments: 26 pages, 15 figures; made minor edits for clarity

Subjects: Populations and Evolution (q-bio.PE); Physics and Society (physics.soc-ph)

[53]  arXiv:2303.04564 [pdf, ps, other]

Title: The Role of Contraction Mode in Determining Exercise Tolerance, Torque-Duration Relationship, and Neuromuscular Fatigue

Authors: Guillaume Ducrocq (MSP), Simon Al Assad (MSP), Nabil Kouzkouz (MSP), Thomas Hureau (MSP)

Journal-ref: Medicine and Science in Sports and Exercise, In press, Publish Ahead of Print

Subjects: Tissues and Organs (q-bio.TO)

[54]  arXiv:2303.04607 [pdf, other]

Title: Effects of a Differentiating Therapy on Cancer-Stem-Cell-Driven Tumors

Authors: Jerónimo Fotinós, Lucas Barberis, Carlos A. Condat

Comments: 21 pages, 10 figures (17 images)

Subjects: Tissues and Organs (q-bio.TO); Biological Physics (physics.bio-ph)

[55]  arXiv:2303.04624 [pdf, ps, other]

Title: A Dynamic Interference Model for Benham's Top

Authors: Yutaka Nishiyama

Comments: 10 pages, 12 figures

Subjects: Neurons and Cognition (q-bio.NC)

[56]  arXiv:2303.04685 [pdf, other]

Title: A Multi-Scale Simulation of Retinal Physiology

Authors: Belal Abuelnasr, Adam R. Stinchcombe

Comments: 24 pages, 9 figures

Subjects: Quantitative Methods (q-bio.QM); Numerical Analysis (math.NA); Tissues and Organs (q-bio.TO)

[57]  arXiv:2303.04691 [pdf, other]

Title: Self-contained Beta-with-Spikes Approximation for Inference Under a Wright-Fisher Model

Authors: Juan Guerrero Montero, Richard A. Blythe

Subjects: Populations and Evolution (q-bio.PE); Statistical Mechanics (cond-mat.stat-mech); Computation and Language (cs.CL)

[58]  arXiv:2303.04808 [pdf, ps, other]

Title: Prevalence and Major Risk Factors of Non-communicable Diseases: A Machine Learning based Cross-Sectional Study

Authors: Mrinmoy Roy, Anica Tasnim Protity, Srabonti Das, Porarthi Dhar

Comments: 25 pages, 10 figures, 3 tables

Subjects: Quantitative Methods (q-bio.QM); Machine Learning (cs.LG); Applications (stat.AP)

[59]  arXiv:2303.04863 [pdf, other]

Title: Bayesian at heart: Towards autonomic outflow estimation via generative state-space modelling of heart rate dynamics

Authors: Fernando E. Rosas, Diego Candia-Rivera, Andrea I Luppi, Yike Guo, Pedro A.M. Mediano

Comments: 12 pages, 5 figures

Subjects: Quantitative Methods (q-bio.QM)

[60]  arXiv:2303.04888 [pdf, ps, other]

Title: Structure-based approach can identify driver nodes in ensembles of biologically-inspired Boolean networks

Authors: Eli Newby, Jorge Gómez Tejeda Zañudo, Réka Albert

Comments: 17 pages, 9 figures

Subjects: Quantitative Methods (q-bio.QM)

[61]  arXiv:2303.04898 [pdf, ps, other]

Title: A variational synthesis of evolutionary and developmental dynamics

Authors: Karl Friston, Daniel Ari Friedman, Axel Constant, V. Bleu Knight, Thomas Parr, John O. Campbell

Subjects: Populations and Evolution (q-bio.PE)

[62]  arXiv:2303.04902 [pdf, ps, other]

Title: Inter-brain substrates of role switching during mother-child interaction

Authors: Yamin Li, Saishuang Wu, Jiayang Xu, Haiwa Wang, Qi Zhu, Wen Shi, Yue Fang, Fan Jiang, Shanbao Tong, Yunting Zhang, Xiaoli Guo

Subjects: Neurons and Cognition (q-bio.NC)

[63]  arXiv:2303.04919 [pdf, other]

Title: Dynamical Analysis of a Lotka-Volterra Competition Model with both Allee and Fear Effect

Authors: Shangming Chen, Fengde Chen, Vaibhava Srivastava, Rana D. Parshad

Subjects: Populations and Evolution (q-bio.PE); Dynamical Systems (math.DS)

[64]  arXiv:2303.05174 [pdf, other]

Title: Emergent rate-based dynamics in duplicate-free populations of spiking neurons

Authors: Valentin Schmutz, Johanni Brea, Wulfram Gerstner

Comments: 41 pages, 4 figures

Subjects: Neurons and Cognition (q-bio.NC)

[65]  arXiv:2303.05221 [pdf, other]

Title: SEAM: An Integrated Activation-Coupled Model of Sentence Processing and Eye Movements in Reading

Authors: Maximilian M. Rabe, Dario Paape, Daniela Mertzen, Shravan Vasishth, Ralf Engbert

Subjects: Neurons and Cognition (q-bio.NC); Computation and Language (cs.CL)

[66]  arXiv:2303.05242 [pdf, ps, other]

Title: Molecular detection and antimicrobial activity of Endophytic fungi isolated from a medical plant Rosmarinus officinalis

Authors: Shimal Yonuis Abdulhadi, Ghazwan Qasim Hasan, Raghad Nawaf Gergees

Comments: 14 pages, 4 figures, 1 table, September 2020 Vol. 23 Issue 13B

Journal-ref: Vol 23, 2020, 14

Subjects: Genomics (q-bio.GN)

[67]  arXiv:2303.05504 [pdf, ps, other]

Title: Computable Phenotypes to Characterize Changing Patient Brain Dysfunction in the Intensive Care Unit

Authors: Yuanfang Ren (1 and 2), Tyler J. Loftus (1 and 3), Ziyuan Guan (1 and 2), Rayon Uddin (1), Benjamin Shickel (1 and 2), Carolina B. Maciel (4), Katharina Busl (4), Parisa Rashidi (1 and 5), Azra Bihorac (1 and 2), Tezcan Ozrazgat-Baslanti (1 and 2) ((1) Intelligent Critical Care Center, University of Florida, Gainesville, FL, (2) Department of Medicine, College of Medicine, University of Florida, Gainesville, FL, (3) Department of Surgery, College of Medicine, University of Florida, Gainesville, FL, (4) Department of Neurology, Neurocritical Care Division, College of Medicine, University of Florida, Gainesville, FL, (5) Crayton Pruitt Family Department of Biomedical Engineering, University of Florida, Gainesville, FL)

Comments: 21 pages, 5 figures, 3 tables, 1 eTable

Subjects: Quantitative Methods (q-bio.QM); Machine Learning (cs.LG); Machine Learning (stat.ML)

[68]  arXiv:2303.05513 [pdf, ps, other]

Title: Development of Pipetting Devices to Separate Protein Complexes

Authors: Christopher M. Altenderfer, Frank N. Chang, Parsaoran Hutapea

Comments: 6 pages, 2 figures, Discovery to Commercialization Conference, The Nanotechnology Institute, October 2009, The Chemical Heritage Foundation, Philadelphia, PA

Subjects: Other Quantitative Biology (q-bio.OT); Fluid Dynamics (physics.flu-dyn)

[69]  arXiv:2303.05541 [pdf, ps, other]

Title: A standardised protocol for assessment of relative SARS-CoV-2 variant severity, with application to severity risk for COVID-19 cases infected with Omicron BA.1 compared to Delta variants in six European countries

Authors: Tommy Nyberg, Peter Bager, Ingrid Bech Svalgaard, Dritan Bejko, Nick Bundle, Josie Evans, Tyra Grove Krause, Jim McMenamin, Joël Mossong, Heather Mutch, Ajibola Omokanye, André Peralta-Santos, Pedro Pinto Leite, Jostein Starrfelt, Simon Thelwall, Lamprini Veneti, Robert Whittaker, John Wood, Richard Pebody, Anne M Presanis

Comments: 21 pages, 6 figures (excluding supplementary material)

Journal-ref: Euro Surveill 2023;28(36)

Subjects: Populations and Evolution (q-bio.PE)

[70]  arXiv:2303.05585 [pdf, ps, other]

Title: Chemical kinetic theory of aging

Authors: Alexey Kondyurin

Subjects: Populations and Evolution (q-bio.PE); Chemical Physics (physics.chem-ph)

[71]  arXiv:2303.05742 [pdf, other]

Title: JUNE-Germany: An Agent-Based Epidemiology Simulation including Multiple Virus Strains, Vaccinations and Testing Campaigns

Authors: Kerem Akdogan, Lucas Heger, Andrew Iskauskas, Friedemann Neuhaus, Matthias Schott

Comments: 10 pages, 11 figures

Subjects: Populations and Evolution (q-bio.PE)

[72]  arXiv:2303.05917 [pdf, other]

Title: International Vaccine Allocation: An Optimization Framework

Authors: Abraham Holleran, Susan E. Martonosi, Michael Veatch

Comments: 32 pages, 5 figures

Subjects: Populations and Evolution (q-bio.PE); Optimization and Control (math.OC)

[73]  arXiv:2303.06004 [pdf, other]

Title: Checking the Statistical Assumptions Underlying the Application of the Standard Deviation and RMS Error to Eye-Movement Time Series: A Comparison between Human and Artificial Eyes

Authors: Lee Friedman, Timothy Hanson, Hal S. Stern, Oleg V. Komogortsev

Comments: 17 pages, 8 figures

Subjects: Neurons and Cognition (q-bio.NC)

[74]  arXiv:2303.06031 [pdf, other]

Title: Investigating the role of visual experience with face-masks in face recognition during COVID-19

Authors: Srijita Karmakar, Koel Das

Comments: Keywords: Face recognition, face-masks, COVID-19, ERP (39 pages, 7 figures)

Subjects: Neurons and Cognition (q-bio.NC)

[75]  arXiv:2303.06041 [pdf, other]

Title: A Bayesian spatio-temporal study of meteorological factors affecting the spread of COVID-19

Authors: Jamie Mullineaux, Takoua Jendoubi, Baptiste Leurent

Comments: 23 pages, 13 figures (inclusive of references and appendix)

Subjects: Populations and Evolution (q-bio.PE)