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Quantitative Biology

Authors and titles for recent submissions

[ total of 119 entries: 1-25 | 26-50 | 51-75 | 76-100 | 101-119 ]
[ showing 25 entries per page: fewer | more | all ]

Thu, 30 May 2024

[1]  arXiv:2405.19228 [pdf, ps, other]
Title: Motor Imagery Task Alters Dynamics of Human Body Posture
Authors: Fatemeh Delavari, Seyyed Mohammad Reza Hashemi Golpayegani, Mohammad Ali Ahmadi-Pajouh
Subjects: Neurons and Cognition (q-bio.NC); Signal Processing (eess.SP)
[2]  arXiv:2405.19221 [pdf, ps, other]
Title: Domain adaptation in small-scale and heterogeneous biological datasets
Authors: Seyedmehdi Orouji, Martin C. Liu, Tal Korem, Megan A. K. Peters
Comments: main manuscript + supplement
Subjects: Quantitative Methods (q-bio.QM); Machine Learning (cs.LG)
[3]  arXiv:2405.19159 [pdf, ps, other]
Title: Precision microfluidic control of neuronal ensembles in cultured cortical networks
Authors: Hakuba Murota, Hideaki Yamamoto, Nobuaki Monma, Shigeo Sato, Ayumi Hirano-Iwata
Comments: 30 pages, 6 figures, 6 supplementary figures
Subjects: Neurons and Cognition (q-bio.NC)
[4]  arXiv:2405.19057 [pdf, other]
Title: Metadata-guided Feature Disentanglement for Functional Genomics
Authors: Alexander Rakowski, Remo Monti, Viktoriia Huryn, Marta Lemanczyk, Uwe Ohler, Christoph Lippert
Subjects: Genomics (q-bio.GN)
[5]  arXiv:2405.18788 [pdf, other]
Title: TVB C++: A Fast and Flexible Back-End for The Virtual Brain
Authors: Ignacio Martín, Gorka Zamora, Jan Fousek, Michael Schirner, Petra Ritter, Viktor Jirsa, Gustavo Deco, Gustavo Patow
Subjects: Neurons and Cognition (q-bio.NC)
[6]  arXiv:2405.18779 [pdf, other]
Title: Categorization of 31 computational methods to detect spatially variable genes from spatially resolved transcriptomics data
Authors: Guanao Yan, Shuo Harper Hua, Jingyi Jessica Li
Subjects: Quantitative Methods (q-bio.QM); Applications (stat.AP)
[7]  arXiv:2405.18768 [pdf, other]
Title: RNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matching
Authors: Divya Nori, Wengong Jin
Comments: Accepted to ICML 2024
Subjects: Biomolecules (q-bio.BM); Machine Learning (cs.LG)
[8]  arXiv:2405.18760 [pdf, ps, other]
Title: Local nature of 0.1 Hz oscillations in microcirculation is confirmed by imaging photoplethysmography
Authors: Irina A. Mizeva, Natalia P. Podolyan, Oleg V. Mamontov, Anastasiia V. Sakovskaia, Alexei A. Kamshilin
Comments: 25 pages, 5 figures
Subjects: Tissues and Organs (q-bio.TO)
[9]  arXiv:2405.18724 [pdf, other]
Title: Adapting Differential Molecular Representation with Hierarchical Prompts for Multi-label Property Prediction
Authors: Linjia Kang, Songhua Zhou, Shuyan Fang, Shichao Liu, Wen Zhang
Subjects: Quantitative Methods (q-bio.QM); Artificial Intelligence (cs.AI); Machine Learning (cs.LG)
[10]  arXiv:2405.18658 [pdf, other]
Title: D-CoRP: Differentiable Connectivity Refinement for Functional Brain Networks
Authors: Haoyu Hu, Hongrun Zhang, Chao Li
Subjects: Neurons and Cognition (q-bio.NC); Artificial Intelligence (cs.AI)
[11]  arXiv:2405.18639 [pdf, other]
Title: Improving Speech Decoding from ECoG with Self-Supervised Pretraining
Authors: Brian A. Yuan, Joseph G. Makin
Subjects: Neurons and Cognition (q-bio.NC); Computation and Language (cs.CL); Machine Learning (cs.LG); Sound (cs.SD); Audio and Speech Processing (eess.AS)
[12]  arXiv:2405.18587 [pdf, other]
Title: Emergence and long-term maintenance of modularity in spiking neural networks with plasticity
Authors: Raphäel Bergoin, Alessandro Torcini, Gustavo Deco, Mathias Quoy, Gorka Zamora-López
Comments: 35 pages, 6 figures
Subjects: Neurons and Cognition (q-bio.NC); Adaptation and Self-Organizing Systems (nlin.AO)
[13]  arXiv:2405.18456 [pdf, ps, other]
Title: The association between neighborhood obesogenic factors and prostate cancer risk and mortality: the Southern Community Cohort Study
Authors: Fekede Asefa Kumsa, Jay H. Fowke, Soheil Hashtarkhani, Brianna M. White, Martha J. Shrubsole, Arash Shaban-Nejad
Comments: 18 Pages, 1 Figure, 8 Tables
Journal-ref: Front Oncol Frontiers in Oncology, 2024 Apr 9:14:1343070
Subjects: Quantitative Methods (q-bio.QM)
[14]  arXiv:2405.18452 [pdf, other]
Title: Immune cells interactions in the tumor microenvironment
Authors: Mobina Tousian, Christian Solis Calero, Julio Cesar Perez Sansalvador
Comments: 12 pages, 8 figures, 0 tables
Subjects: Cell Behavior (q-bio.CB); Biological Physics (physics.bio-ph)
[15]  arXiv:2405.19180 (cross-list from astro-ph.EP) [pdf, ps, other]
Title: Observation of Significant Photosynthesis in Garden Cress and Cyanobacteria under Simulated Illumination from a K Dwarf Star
Authors: Iva Vilović, Dirk Schulze-Makuch, René Heller
Subjects: Earth and Planetary Astrophysics (astro-ph.EP); Other Quantitative Biology (q-bio.OT)
[16]  arXiv:2405.18986 (cross-list from cs.LG) [pdf, other]
Title: Robust Optimization in Protein Fitness Landscapes Using Reinforcement Learning in Latent Space
Authors: Minji Lee, Luiz Felipe Vecchietti, Hyunkyu Jung, Hyun Joo Ro, Meeyoung Cha, Ho Min Kim
Comments: ICML 2024
Subjects: Machine Learning (cs.LG); Biomolecules (q-bio.BM); Quantitative Methods (q-bio.QM)
[17]  arXiv:2405.18968 (cross-list from cs.AI) [pdf, other]
Title: UniIF: Unified Molecule Inverse Folding
Authors: Zhangyang Gao, Jue Wang, Cheng Tan, Lirong Wu, Yufei Huang, Siyuan Li, Zhirui Ye, Stan Z. Li
Subjects: Artificial Intelligence (cs.AI); Machine Learning (cs.LG); Quantitative Methods (q-bio.QM)
[18]  arXiv:2405.18763 (cross-list from math.PR) [pdf, ps, other]
Title: Stationary distribution approximations of Two-island Wright-Fisher and seed-bank models using Stein's method
Authors: Han L. Gan, Maite Wilke-Berenguer
Comments: 37 pages
Subjects: Probability (math.PR); Populations and Evolution (q-bio.PE)
[19]  arXiv:2405.18749 (cross-list from cs.LG) [pdf, other]
Title: A SARS-CoV-2 Interaction Dataset and VHH Sequence Corpus for Antibody Language Models
Authors: Hirofumi Tsuruta, Hiroyuki Yamazaki, Ryota Maeda, Ryotaro Tamura, Akihiro Imura
Subjects: Machine Learning (cs.LG); Genomics (q-bio.GN)
[20]  arXiv:2405.18655 (cross-list from cs.LG) [pdf, other]
Title: CAVACHON: a hierarchical variational autoencoder to integrate multi-modal single-cell data
Authors: Ping-Han Hsieh, Ru-Xiu Hsiao, Katalin Ferenc, Anthony Mathelier, Rebekka Burkholz, Chien-Yu Chen, Geir Kjetil Sandve, Tatiana Belova, Marieke Lydia Kuijjer
Subjects: Machine Learning (cs.LG); Artificial Intelligence (cs.AI); Genomics (q-bio.GN)
[21]  arXiv:2405.18605 (cross-list from cs.CL) [pdf, ps, other]
Title: BioBERT-based Deep Learning and Merged ChemProt-DrugProt for Enhanced Biomedical Relation Extraction
Authors: Bridget T. McInnes, Jiawei Tang, Darshini Mahendran, Mai H. Nguyen
Subjects: Computation and Language (cs.CL); Information Retrieval (cs.IR); Molecular Networks (q-bio.MN)
[22]  arXiv:2405.18507 (cross-list from cs.LG) [pdf, other]
Title: Injecting Hierarchical Biological Priors into Graph Neural Networks for Flow Cytometry Prediction
Authors: Fatemeh Nassajian Mojarrad, Lorenzo Bini, Thomas Matthes, Stéphane Marchand-Maillet
Comments: 14 pages, ICML Conference Workshop 2024. arXiv admin note: text overlap with arXiv:2402.18610
Subjects: Machine Learning (cs.LG); Artificial Intelligence (cs.AI); Quantitative Methods (q-bio.QM)

Wed, 29 May 2024 (showing first 3 of 20 entries)

[23]  arXiv:2405.18419 [pdf, other]
Title: Exploring the Evolution of Altruistic Punishment with a PDE Model of Cultural Multilevel Selection
Authors: Daniel B. Cooney
Comments: 78 pages, 16 figures
Subjects: Populations and Evolution (q-bio.PE); Physics and Society (physics.soc-ph)
[24]  arXiv:2405.18402 [pdf, other]
Title: Antigenic Cooperation in Viral Populations: Redistribution of Loads Among Altruistic Viruses and Maximal Load per Altruist
Authors: Leonid Bunimovich, Athulya Ram
Comments: 37 pages, 9 figures
Subjects: Populations and Evolution (q-bio.PE)
[25]  arXiv:2405.18343 [pdf, other]
Title: On in-silico estimation of left ventricular end-diastolic pressure from cardiac strains
Authors: Emilio A. Mendiola, Raza Rana Mehdi, Dipan J. Shah, Reza Avazmohammadi
Subjects: Tissues and Organs (q-bio.TO)
[ total of 119 entries: 1-25 | 26-50 | 51-75 | 76-100 | 101-119 ]
[ showing 25 entries per page: fewer | more | all ]

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