Title: Limitations of atomistic modeling to reveal ejection of proteins from charged nanodroplets

Abstract: Molecular dynamics using atomistic modeling is frequently used to unravel the mechanisms of macroion release from electrosprayed droplets. However, atomistic modeling is currently feasible for only the smallest window of droplet sizes appearing at the end of a disintegrating droplet's lifetime. The relevance of the observations made to the actual droplet evolution, which is much longer that the simulated sizes, has not been addressed. Here, we perform a systematic study of desolvation mechanisms of poly(ethylene glycol) (PEG), protonated peptides of different compositions and proteins in order to (a) examine whether atomistic modeling can establish the extrusion mechanism of proteins from droplets and (b) obtain insight for the charging mechanism in larger droplets than those simulated. Atomistic modeling of PEG charging shows that above a critical droplet size charging occurs transiently by transfer of ions from the solvent to the macroion, while below the critical size, the capture of the ion from PEG has a lifetime sufficiently long for extrusion of the charged PEG from an aqueous droplet. This is the first report of the role of droplet curvature in the conformations and charging of macroions. Simulations with highly hydrophobic peptides show that partial extrusion of a peptide from the droplet surface is rare relative to desolvation by drying-out. Differently from what has been presented in the literature we argue that atomistic simulations have not sufficiently established extrusion mechanism of proteins from droplets and their charging mechanism. Moreover, we argue that release of highly charged proteins can occur at an earlier stage of a droplet's lifetime than predicted by atomistic modeling. In this earlier stage, we emphasize the key role of jets emanating from a droplet at the point of charge-induced instability in the release of proteins.