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Condensed Matter > Statistical Mechanics

Title: Non-Markovian gene expression

Abstract: We study two non-Markovian gene-expression models in which protein production is a stochastic process with a fat-tailed non-exponential waiting time distribution (WTD). For both models, we find two distinct scaling regimes separated by an exponentially long time, proportional to the mean first passage time (MFPT) to a ground state (with zero proteins) of the dynamics, from which the system can only exit via a non-exponential reaction. At times shorter than the MFPT the dynamics are stationary and ergodic, entailing similarity across different realizations of the same process, with an increased Fano factor of the protein distribution, even when the WTD has a finite cutoff. Notably, at times longer than the MFPT the dynamics are nonstationary and nonergodic, entailing significant variability across different realizations. The MFPT to the ground state is shown to directly affect the average population sizes and we postulate that the transition to nonergodicity is universal in such non-Markovian models.
Comments: 8 pages, 4 figures, to appear as a Letter in Phys. Rev. Research (2024)
Subjects: Statistical Mechanics (cond-mat.stat-mech); Molecular Networks (q-bio.MN)
Cite as: arXiv:2308.06538 [cond-mat.stat-mech]
  (or arXiv:2308.06538v2 [cond-mat.stat-mech] for this version)

Submission history

From: Michael Assaf [view email]
[v1] Sat, 12 Aug 2023 11:43:36 GMT (352kb,D)
[v2] Fri, 5 Apr 2024 21:11:25 GMT (1205kb,D)

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