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Quantitative Biology

Authors and titles for recent submissions, skipping first 87

[ total of 100 entries: 1-25 | 13-37 | 38-62 | 63-87 | 88-100 ]
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Mon, 27 May 2024 (continued, showing last 13 of 15 entries)

[88]  arXiv:2405.15448 [pdf, other]
Title: Dynamical behavior of Predator-Prey with Allee Effect on Both Populations and Disease in Predator
Authors: Khushbu Singh, K. Kaladhar
Subjects: Populations and Evolution (q-bio.PE); Dynamical Systems (math.DS)
[89]  arXiv:2405.15206 [pdf, other]
Title: Maximum Caliber Infers Effective Coupling and Response from Spiking Networks
Authors: Kevin S. Chen, Ying-Jen Yang
Subjects: Neurons and Cognition (q-bio.NC); Biological Physics (physics.bio-ph)
[90]  arXiv:2405.15158 [pdf, other]
Title: ProtFAD: Introducing function-aware domains as implicit modality towards protein function perception
Authors: Mingqing Wang, Zhiwei Nie, Yonghong He, Zhixiang Ren
Comments: 16 pages, 6 figures, 5 tables
Subjects: Biomolecules (q-bio.BM); Machine Learning (cs.LG)
[91]  arXiv:2405.15109 [pdf, other]
Title: An Update to the SBML Human-Readable Antimony Language
Authors: Lucian Smith, Herbert M Sauro
Subjects: Quantitative Methods (q-bio.QM); Molecular Networks (q-bio.MN)
[92]  arXiv:2405.14925 [pdf, other]
Title: PILOT: Equivariant diffusion for pocket conditioned de novo ligand generation with multi-objective guidance via importance sampling
Authors: Julian Cremer, Tuan Le, Frank Noé, Djork-Arné Clevert, Kristof T. Schütt
Subjects: Biomolecules (q-bio.BM); Artificial Intelligence (cs.AI); Computational Engineering, Finance, and Science (cs.CE); Machine Learning (cs.LG)
[93]  arXiv:2405.14904 [pdf, other]
Title: Large deviation principles and evolutionary multiple structure alignment of non-coding RNA
Authors: Brandon Legried
Comments: 25 pages main document, 31 pages total with references and appendix, 1 figure
Subjects: Other Quantitative Biology (q-bio.OT)
[94]  arXiv:2405.14887 [pdf, ps, other]
Title: Modeling the dynamics of the Hepatitis B virus via a variable-order discrete system
Authors: Meriem Boukhobza, Amar Debbouche, Lingeshwaran Shangerganesh, Delfim F. M. Torres
Comments: This is a preprint whose final form is published in 'Chaos, Solitons and Fractals' (see this https URL)
Journal-ref: Chaos Solitons Fractals 184 (2024), Art. 114987, 8pp
Subjects: Populations and Evolution (q-bio.PE); Dynamical Systems (math.DS)
[95]  arXiv:2405.15701 (cross-list from eess.IV) [pdf, other]
Title: realSEUDO for real-time calcium imaging analysis
Authors: Iuliia Dmitrieva, Sergey Babkin, Adam S. Charles
Comments: 20 pages, 8 figures
Subjects: Image and Video Processing (eess.IV); Neurons and Cognition (q-bio.NC); Quantitative Methods (q-bio.QM); Computation (stat.CO)
[96]  arXiv:2405.15539 (cross-list from stat.ML) [pdf, other]
Title: A generalized neural tangent kernel for surrogate gradient learning
Authors: Luke Eilers, Raoul-Martin Memmesheimer, Sven Goedeke
Comments: 52 pages, 3 figures + 2 supplementary figures
Subjects: Machine Learning (stat.ML); Disordered Systems and Neural Networks (cond-mat.dis-nn); Machine Learning (cs.LG); Probability (math.PR); Neurons and Cognition (q-bio.NC)
[97]  arXiv:2405.15535 (cross-list from math.DS) [pdf, other]
Title: Formulating human risk response in epidemic models: exogenous vs endogenous approaches
Authors: Leah LeJeune, Navid Ghaffarzadegan, Lauren Childs, Omar Saucedo
Comments: 23 pages, 7 figures, submitted to European Journal of Operational Research
Subjects: Dynamical Systems (math.DS); Populations and Evolution (q-bio.PE)
[98]  arXiv:2405.15275 (cross-list from eess.IV) [pdf, other]
Title: NMGrad: Advancing Histopathological Bladder Cancer Grading with Weakly Supervised Deep Learning
Authors: Saul Fuster, Umay Kiraz, Trygve Eftestøl, Emiel A.M. Janssen, Kjersti Engan
Comments: this https URL
Subjects: Image and Video Processing (eess.IV); Computer Vision and Pattern Recognition (cs.CV); Quantitative Methods (q-bio.QM)
[99]  arXiv:2405.15036 (cross-list from cond-mat.stat-mech) [pdf, other]
Title: Input-driven circuit reconfiguration in critical recurrent neural networks
Authors: Marcelo O. Magnasco
Comments: Supplementary Movies Available Upon Request
Subjects: Statistical Mechanics (cond-mat.stat-mech); Machine Learning (cs.LG); Neurons and Cognition (q-bio.NC)
[100]  arXiv:2405.14968 (cross-list from physics.bio-ph) [pdf, other]
Title: Compound Mutations in the Abl1 Kinase Cause Inhibitor Resistance by Shifting DFG Flip Mechanisms and Relative State Populations
Authors: Gabriel Monteiro da Silva, Kyle Lam, David C. Dalgarno, Brenda M. Rubenstein
Comments: 34 pages, 10 figures
Subjects: Biological Physics (physics.bio-ph); Biomolecules (q-bio.BM)
[ total of 100 entries: 1-25 | 13-37 | 38-62 | 63-87 | 88-100 ]
[ showing 25 entries per page: fewer | more | all ]

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