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Quantitative Biology

Authors and titles for recent submissions, skipping first 31

[ total of 111 entries: 1-25 | 7-31 | 32-56 | 57-81 | 82-106 | 107-111 ]
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Tue, 28 May 2024 (continued, showing last 21 of 32 entries)

[32]  arXiv:2405.16357 [pdf, other]
Title: Exploring the Enigma of Neural Dynamics Through A Scattering-Transform Mixer Landscape for Riemannian Manifold
Authors: Tingting Dan, Ziquan Wei, Won Hwa Kim, Guorong Wu
Comments: 15 pages, 6 figures
Subjects: Neurons and Cognition (q-bio.NC)
[33]  arXiv:2405.16346 [pdf, other]
Title: A modular and scalable web platform for computational phylogenetics
Authors: Nyckollas Brandão, André Jesus, André Páscoa, Alexandre P. Francisco, Mário Ramirez, Cátia Vaz
Comments: 12 pages, 5 figures
Subjects: Populations and Evolution (q-bio.PE); Social and Information Networks (cs.SI)
[34]  arXiv:2405.15968 [pdf, other]
Title: Spatial modeling algorithms for reactions and transport (SMART) in biological cells
Authors: Emmet A. Francis, Justin G. Laughlin, Jørgen S. Dokken, Henrik N.T. Finsberg, Christopher T. Lee, Marie E. Rognes, Padmini Rangamani
Subjects: Quantitative Methods (q-bio.QM); Molecular Networks (q-bio.MN)
[35]  arXiv:2405.15928 [pdf, other]
Title: PatchProt: Hydrophobic patch prediction using protein foundation models
Authors: Dea Gogishvili, Emmanuel Minois-Genin, Jan van Eck, Sanne Abeln
Subjects: Quantitative Methods (q-bio.QM); Artificial Intelligence (cs.AI); Machine Learning (cs.LG)
[36]  arXiv:2405.15905 [pdf, ps, other]
Title: Tangent space functional reconfigurations in individuals at risk for alcohol use disorder
Authors: Mahdi Moghaddam, Mario Dzemidzic, Daniel Guerrero, Mintao Liu, Jonathan Alessi, Martin H. Plawecki, Jaroslaw Harezlak, David Kareken, Joaquín Goñi
Comments: 29 pages, 9 Figures, 2 Tables, 3 Supplementary Figures, 1 Supplementary Table
Subjects: Neurons and Cognition (q-bio.NC)
[37]  arXiv:2405.15841 [pdf, other]
Title: Dual network structure of the AV node
Authors: Anna V. Maltsev, Yasir Z. Barlas, Adina Hazan, Rui Zhang, Michela Ottolia, Joshua I. Goldhaber
Comments: 14 pages, 8 figures at the end of the manuscript, two videos and three datasets in the Source folder
Subjects: Quantitative Methods (q-bio.QM); Biological Physics (physics.bio-ph)
[38]  arXiv:2405.15840 [pdf, other]
Title: Learning the Language of Protein Structure
Authors: Benoit Gaujac, Jérémie Donà, Liviu Copoiu, Timothy Atkinson, Thomas Pierrot, Thomas D. Barrett
Subjects: Quantitative Methods (q-bio.QM); Machine Learning (cs.LG)
[39]  arXiv:2405.15812 [pdf, other]
Title: Pseudo Channel: Time Embedding for Motor Imagery Decoding
Authors: Zhengqing Miao, Meirong Zhao
Comments: 13 pages, 5 figures
Subjects: Neurons and Cognition (q-bio.NC); Artificial Intelligence (cs.AI)
[40]  arXiv:2405.15810 [pdf, ps, other]
Title: Peripheral Nervous System Responses to Food Stimuli: Analysis Using Data Science Approaches
Authors: Maelle Moranges (CRNL, LIRIS), Marc Plantevit (LIRIS, LRE), Moustafa Bensafi (CRNL)
Journal-ref: Basic Protocols on Emotions, Senses, and Foods, Springer US; Springer US, pp.233-246, 2023, Methods and Protocols in Food Science, 978-1-0716-2933-8
Subjects: Neurons and Cognition (q-bio.NC)
[41]  arXiv:2405.15805 [pdf, other]
Title: DSAM: A Deep Learning Framework for Analyzing Temporal and Spatial Dynamics in Brain Networks
Authors: Bishal Thapaliya, Robyn Miller, Jiayu Chen, Yu-Ping Wang, Esra Akbas, Ram Sapkota, Bhaskar Ray, Pranav Suresh, Santosh Ghimire, Vince Calhoun, Jingyu Liu
Comments: 18 Pages, 4 figures
Subjects: Neurons and Cognition (q-bio.NC); Artificial Intelligence (cs.AI); Machine Learning (cs.LG)
[42]  arXiv:2405.17189 (cross-list from physics.soc-ph) [pdf, other]
Title: Rebound in epidemic control: How misaligned vaccination timing amplifies infection peaks
Authors: Piergiorgio Castioni, Sergio Gòmez, Clara Granell, Alex Arenas
Comments: 18 pages, 7 figures
Subjects: Physics and Society (physics.soc-ph); Populations and Evolution (q-bio.PE)
[43]  arXiv:2405.17143 (cross-list from physics.bio-ph) [pdf, other]
Title: Uncovering multiscale structure in the variability of larval zebrafish navigation
Authors: Gautam Sridhar, Massimo Vergassola, Joao C. Marques, Michael B. Orger, Antonio Carlos Costa, Claire Wyart
Comments: 31 pages, 7 main figures, 1 supplementary table and 8 supplementary figures
Subjects: Biological Physics (physics.bio-ph); Neurons and Cognition (q-bio.NC); Quantitative Methods (q-bio.QM)
[44]  arXiv:2405.16931 (cross-list from physics.optics) [pdf, other]
Title: ChiSCAT: unsupervised learning of recurrent cellular micro-motion patterns from a chaotic speckle pattern
Authors: Andrii Trelin, Sophie Kussauer, Paul Weinbrenner, Anja Clasen, Robert David, Christian Rimmbach, Friedemann Reinhard
Subjects: Optics (physics.optics); Quantitative Methods (q-bio.QM)
[45]  arXiv:2405.16885 (cross-list from stat.ME) [pdf, other]
Title: Hidden Markov modelling of spatio-temporal dynamics of measles in 1750-1850 Finland
Authors: Tiia-Maria Pasanen, Jouni Helske, Tarmo Ketola
Subjects: Methodology (stat.ME); Populations and Evolution (q-bio.PE)
[46]  arXiv:2405.16714 (cross-list from cs.CL) [pdf, other]
Title: Crafting Interpretable Embeddings by Asking LLMs Questions
Authors: Vinamra Benara, Chandan Singh, John X. Morris, Richard Antonello, Ion Stoica, Alexander G. Huth, Jianfeng Gao
Subjects: Computation and Language (cs.CL); Artificial Intelligence (cs.AI); Machine Learning (cs.LG); Neurons and Cognition (q-bio.NC)
[47]  arXiv:2405.16391 (cross-list from cs.LG) [pdf, other]
Title: When does compositional structure yield compositional generalization? A kernel theory
Authors: Samuel Lippl, Kim Stachenfeld
Subjects: Machine Learning (cs.LG); Neurons and Cognition (q-bio.NC)
[48]  arXiv:2405.16248 (cross-list from eess.IV) [pdf, ps, other]
Title: Combining Radiomics and Machine Learning Approaches for Objective ASD Diagnosis: Verifying White Matter Associations with ASD
Authors: Junlin Song, Yuzhuo Chen, Yuan Yao, Zetong Chen, Renhao Guo, Lida Yang, Xinyi Sui, Qihang Wang, Xijiao Li, Aihua Cao, Wei Li
Subjects: Image and Video Processing (eess.IV); Computer Vision and Pattern Recognition (cs.CV); Machine Learning (cs.LG); Quantitative Methods (q-bio.QM)
[49]  arXiv:2405.16179 (cross-list from math.DS) [pdf, ps, other]
Title: Network reduction and absence of Hopf Bifurcations in dual phosphorylation networks with three Intermediates
Authors: Elisenda Feliu, Nidhi Kaihnsa
Subjects: Dynamical Systems (math.DS); Symbolic Computation (cs.SC); Molecular Networks (q-bio.MN)
[50]  arXiv:2405.16123 (cross-list from cs.AI) [pdf, other]
Title: Retro-prob: Retrosynthetic Planning Based on a Probabilistic Model
Authors: Chengyang Tian, Yangpeng Zhang, Yang Liu
Subjects: Artificial Intelligence (cs.AI); Biomolecules (q-bio.BM)
[51]  arXiv:2405.16035 (cross-list from math.CO) [pdf, other]
Title: A dissimilarity measure for semidirected networks
Authors: Michael Maxfield, Jingcheng Xu, Cécile Ané
Subjects: Combinatorics (math.CO); Populations and Evolution (q-bio.PE)
[52]  arXiv:2405.15976 (cross-list from cs.CV) [pdf, other]
Title: Understanding the Impact of Training Set Size on Animal Re-identification
Authors: Aleksandr Algasov, Ekaterina Nepovinnykh, Tuomas Eerola, Heikki Kälviäinen, Charles V. Stewart, Lasha Otarashvili, Jason A. Holmberg
Subjects: Computer Vision and Pattern Recognition (cs.CV); Populations and Evolution (q-bio.PE)

Mon, 27 May 2024 (showing first 4 of 15 entries)

[53]  arXiv:2405.15544 [pdf, other]
Title: Knowledge-enhanced Relation Graph and Task Sampling for Few-shot Molecular Property Prediction
Authors: Zeyu Wang, Tianyi Jiang, Yao Lu, Xiaoze Bao, Shanqing Yu, Bin Wei, Qi Xuan
Subjects: Quantitative Methods (q-bio.QM); Artificial Intelligence (cs.AI); Machine Learning (cs.LG)
[54]  arXiv:2405.15489 [pdf, other]
Title: Out of Many, One: Designing and Scaffolding Proteins at the Scale of the Structural Universe with Genie 2
Authors: Yeqing Lin, Minji Lee, Zhao Zhang, Mohammed AlQuraishi
Subjects: Biomolecules (q-bio.BM); Machine Learning (cs.LG)
[55]  arXiv:2405.15448 [pdf, other]
Title: Dynamical behavior of Predator-Prey with Allee Effect on Both Populations and Disease in Predator
Authors: Khushbu Singh, K. Kaladhar
Subjects: Populations and Evolution (q-bio.PE); Dynamical Systems (math.DS)
[56]  arXiv:2405.15206 [pdf, other]
Title: Maximum Caliber Infers Effective Coupling and Response from Spiking Networks
Authors: Kevin S. Chen, Ying-Jen Yang
Subjects: Neurons and Cognition (q-bio.NC); Biological Physics (physics.bio-ph)
[ total of 111 entries: 1-25 | 7-31 | 32-56 | 57-81 | 82-106 | 107-111 ]
[ showing 25 entries per page: fewer | more | all ]

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