We gratefully acknowledge support from
the Simons Foundation and member institutions.

Quantitative Biology

Authors and titles for recent submissions, skipping first 75

[ total of 111 entries: 1-25 | 26-50 | 51-75 | 76-100 | 101-111 ]
[ showing 25 entries per page: fewer | more | all ]

Fri, 24 May 2024 (continued, showing last 22 of 30 entries)

[76]  arXiv:2405.14028 [pdf, other]
Title: HoverFast: an accurate, high-throughput, clinically deployable nuclear segmentation tool for brightfield digital pathology images
Authors: Petros Liakopoulos, Julien Massonnet, Jonatan Bonjour, Medya Tekes Mizrakli, Simon Graham, Michel A. Cuendet, Amanda H. Seipel, Olivier Michielin, Doron Merkler, Andrew Janowczyk
Comments: 9 pages, 3 figures, 1 appendix
Subjects: Quantitative Methods (q-bio.QM)
[77]  arXiv:2405.13825 [pdf, other]
Title: Range-Limited Heaps' Law for Functional DNA Words in the Human Genome
Authors: Wentian Li, Yannis Almirantis, Astero Provata
Comments: 5 figures
Subjects: Genomics (q-bio.GN)
[78]  arXiv:2405.13394 [pdf, other]
Title: A theory of neural emulators
Authors: Catalin C. Mitelut
Subjects: Neurons and Cognition (q-bio.NC); Artificial Intelligence (cs.AI)
[79]  arXiv:2405.13305 [pdf, ps, other]
Title: Lessons to learn for better safeguarding of genetic resources during tree pandemics: the case of ash dieback in Europe
Authors: Jan-Peter George, Mari Rusanen, Egbert Beuker, Leena Yrjänä, Volkmar Timmermann, Nenad Potocic, Sakari Välimäki, Heino Konrad
Subjects: Populations and Evolution (q-bio.PE)
[80]  arXiv:2405.13239 [pdf, other]
Title: Jump-Switch-Flow: hybrid stochastic-deterministic solutions of compartmental models
Authors: Domenic P.J. Germano, Alexander E. Zarebski, Sophie Hautphenne, Robert Moss, Jennifer A. Flegg, Mark B. Flegg
Subjects: Populations and Evolution (q-bio.PE); Dynamical Systems (math.DS)
[81]  arXiv:2405.13182 [pdf, other]
Title: Robustly encoding certainty in a metastable neural circuit model
Authors: Heather L Cihak, Zachary P Kilpatrick
Comments: 14 pages, 10 figures
Subjects: Neurons and Cognition (q-bio.NC); Pattern Formation and Solitons (nlin.PS)
[82]  arXiv:2405.12998 [pdf, ps, other]
Title: The miscalibration of the honeybee odometer
Authors: Laura Luebbert, Lior Pachter
Comments: 16 pages
Subjects: Other Quantitative Biology (q-bio.OT); Biological Physics (physics.bio-ph)
[83]  arXiv:2405.14796 (cross-list from cs.CV) [pdf, other]
Title: Generative Plant Growth Simulation from Sequence-Informed Environmental Conditions
Authors: Mohamed Debbagh, Yixue Liu, Zhouzhou Zheng, Xintong Jiang, Shangpeng Sun, Mark Lefsrud
Subjects: Computer Vision and Pattern Recognition (cs.CV); Artificial Intelligence (cs.AI); Quantitative Methods (q-bio.QM)
[84]  arXiv:2405.14682 (cross-list from nlin.PS) [pdf, other]
Title: Turing instabilities for three interacting species
Authors: Vit Piskovsky
Comments: 6 pages, 1 figure
Subjects: Pattern Formation and Solitons (nlin.PS); Dynamical Systems (math.DS); Spectral Theory (math.SP); Quantitative Methods (q-bio.QM)
[85]  arXiv:2405.14607 (cross-list from nlin.CD) [pdf, other]
Title: Discontinuous transition to chaos in a canonical random neural network
Authors: Diego Pazó
Comments: Submitted to Physical Review E
Subjects: Chaotic Dynamics (nlin.CD); Neurons and Cognition (q-bio.NC)
[86]  arXiv:2405.14600 (cross-list from cs.AI) [pdf, other]
Title: Discretization of continuous input spaces in the hippocampal autoencoder
Authors: Adrian F. Amil, Ismael T. Freire, Paul F. M. J. Verschure
Subjects: Artificial Intelligence (cs.AI); Machine Learning (cs.LG); Neurons and Cognition (q-bio.NC)
[87]  arXiv:2405.14473 (cross-list from cs.LG) [pdf, other]
Title: Poisson Variational Autoencoder
Authors: Hadi Vafaii, Dekel Galor, Jacob L. Yates
Subjects: Machine Learning (cs.LG); Artificial Intelligence (cs.AI); Neurons and Cognition (q-bio.NC)
[88]  arXiv:2405.14419 (cross-list from cs.CV) [pdf, other]
Title: Motion-based video compression for resource-constrained camera traps
Authors: Malika Nisal Ratnayake, Lex Gallon, Adel N. Toosi, Alan Dorin
Comments: 6 pages, 2 figures, 2 tables
Subjects: Computer Vision and Pattern Recognition (cs.CV); Artificial Intelligence (cs.AI); Quantitative Methods (q-bio.QM)
[89]  arXiv:2405.14370 (cross-list from math.AT) [pdf, other]
Title: New Aspects of Analyzing Amyloid Fibrils
Authors: Xiaoxi Lin, Yunpeng Zi, Jie Wu
Comments: Comments are welcomed!
Subjects: Algebraic Topology (math.AT); Biomolecules (q-bio.BM)
[90]  arXiv:2405.14289 (cross-list from cond-mat.dis-nn) [pdf, other]
Title: Generating-functional analysis of random Lotka-Volterra systems: A step-by-step guide
Authors: Tobias Galla
Comments: 81 pages, 8 figures
Subjects: Disordered Systems and Neural Networks (cond-mat.dis-nn); Statistical Mechanics (cond-mat.stat-mech); Populations and Evolution (q-bio.PE)
[91]  arXiv:2405.14108 (cross-list from cs.LG) [pdf, other]
Title: Deep Learning for Protein-Ligand Docking: Are We There Yet?
Authors: Alex Morehead, Nabin Giri, Jian Liu, Jianlin Cheng
Comments: 22 pages, 1 table, 22 figures. Under review. Code, data, tutorials, and benchmark results are available at this https URL
Subjects: Machine Learning (cs.LG); Artificial Intelligence (cs.AI); Biomolecules (q-bio.BM); Quantitative Methods (q-bio.QM)
[92]  arXiv:2405.13854 (cross-list from cond-mat.stat-mech) [pdf, other]
Title: On the dynamics of convolutional recurrent neural networks near their critical point
Authors: Aditi Chandra, Marcelo O. Magnasco
Subjects: Statistical Mechanics (cond-mat.stat-mech); Machine Learning (cs.LG); Neurons and Cognition (q-bio.NC)
[93]  arXiv:2405.13655 (cross-list from eess.IV) [pdf, other]
Title: A Deep Learning Approach to Multi-Fiber Parameter Estimation and Uncertainty Quantification in Diffusion MRI
Authors: William Consagra, Lipeng Ning, Yogesh Rathi
Subjects: Image and Video Processing (eess.IV); Quantitative Methods (q-bio.QM); Applications (stat.AP); Computation (stat.CO)
[94]  arXiv:2405.13643 (cross-list from cs.CE) [pdf, other]
Title: Fully automated construction of three-dimensional finite element simulations from Optical Coherence Tomography
Authors: Ross Straughan, Karim Kadry, Sahil A. Parikh, Elazer R. Edelman, Farhad R. Nezami
Journal-ref: Comp. Bio. Med. Volume 165, October 2023, 107341
Subjects: Computational Engineering, Finance, and Science (cs.CE); Tissues and Organs (q-bio.TO)
[95]  arXiv:2405.13521 (cross-list from cond-mat.stat-mech) [pdf, ps, other]
Title: Run-and-tumble particle with saturating rates
Authors: Kavita Jain, Sakuntala Chatterjee
Subjects: Statistical Mechanics (cond-mat.stat-mech); Biological Physics (physics.bio-ph); Cell Behavior (q-bio.CB)
[96]  arXiv:2405.13424 (cross-list from cond-mat.stat-mech) [pdf, other]
Title: Emergent behaviour and phase transitions in spatially distributed multi-cellular metabolic networks
Authors: K. Narayanankutty, J. A. Pereiro-Morejon, A. Ferrero, V. Onesto, S. Forciniti, L. L. del Mercato, R. Mulet, A. De Martino, D. S. Tourigny, D. De Martino
Comments: Main(14 pages)+ supporting information(14 pages). Comments are welcome
Subjects: Statistical Mechanics (cond-mat.stat-mech); Biological Physics (physics.bio-ph); Cell Behavior (q-bio.CB)
[97]  arXiv:2405.13171 (cross-list from cs.HC) [pdf, ps, other]
Title: Launching Your VR Neuroscience Laboratory
Authors: Ying Choon Wu, Christopher Maymon, Jonathon Paden, Weichen Liu
Journal-ref: In Virtual Reality in Behavioral Neuroscience: New Insights and Methods (pp. 25-46). Cham: Springer International Publishing (2023)
Subjects: Human-Computer Interaction (cs.HC); Neurons and Cognition (q-bio.NC)

Wed, 22 May 2024 (showing first 3 of 14 entries)

[98]  arXiv:2405.12941 [pdf, other]
Title: Metacognitive particles, mental action and the sense of agency
Authors: Lars Sandved-Smith, Lancelot Da Costa
Comments: 13 pages, 4 figures
Subjects: Neurons and Cognition (q-bio.NC); Adaptation and Self-Organizing Systems (nlin.AO); Biological Physics (physics.bio-ph)
[99]  arXiv:2405.12897 [pdf, other]
Title: Principles of bursty mRNA expression and irreversibility in single cells and extrinsically varying populations
Authors: James Holehouse
Comments: 15 pages, 6 figures
Subjects: Subcellular Processes (q-bio.SC); Statistical Mechanics (cond-mat.stat-mech); Populations and Evolution (q-bio.PE)
[100]  arXiv:2405.12815 [pdf, ps, other]
Title: Could a Computer Architect Understand our Brain?
Authors: Valentin Puente-Varona
Subjects: Neurons and Cognition (q-bio.NC)
[ total of 111 entries: 1-25 | 26-50 | 51-75 | 76-100 | 101-111 ]
[ showing 25 entries per page: fewer | more | all ]

Disable MathJax (What is MathJax?)

Links to: arXiv, form interface, find, q-bio, new, 2405, contact, help  (Access key information)