Biological Physics

Authors and titles for physics.bio-ph in Mar 2024

[1]  arXiv:2403.00001 [pdf, other]

Title: Metabolic scaling in small life forms

Authors: Mark E. Ritchie, Christopher P. Kempes

Comments: 22 pages, 6 figures

Subjects: Biological Physics (physics.bio-ph)

[2]  arXiv:2403.00003 [pdf, other]

Title: Radical Pair Mechanism and the Role of Chirality-Induced Spin Selectivity during Planaria Regeneration: Effect of Weak Magnetic Field on ROS levels

Authors: Yash Tiwari, Parul Raghuvanshi, Vishvendra Singh Poonia

Subjects: Biological Physics (physics.bio-ph); Quantum Physics (quant-ph)

[3]  arXiv:2403.00004 [pdf, ps, other]

Title: Evaporation of bacteria-laden surrogate respiratory fluid droplets: On a hydrophilic substrate versus contact-free environment confers differential bacterial infectivity

Authors: Amey Nitin Agharkar, Dipasree Hajra, Durbar Roy, Vivek Jaiswal, Prasenjit Kabi, Dipshikha Chakravortty, Saptarshi Basu

Subjects: Biological Physics (physics.bio-ph)

[4]  arXiv:2403.00008 [pdf, other]

Title: Mathematical models of drug delivery via a contact lens during wear

Authors: Daniel M. Anderson, Rayanne A. Luke

Comments: 44 pages, 20 figures, 4 tables

Subjects: Biological Physics (physics.bio-ph); Numerical Analysis (math.NA)

[5]  arXiv:2403.00022 [pdf, ps, other]

Title: Spiral wave dynamics in a neuronal network model

Authors: Diogo L. M. Souza, Fernando S. Borges, Enrique C. Gabrick, Lucas E. Bentivoglio, Paulo R. Protachevicz, Vagner dos Santos, Ricardo L. Viana, Ibere L. Caldas, Kelly C. Iarosz, Antonio M. Batista, Jürgen Kurths

Subjects: Biological Physics (physics.bio-ph); Medical Physics (physics.med-ph); Neurons and Cognition (q-bio.NC)

[6]  arXiv:2403.00764 [pdf, other]

Title: Optical-coherence-tomography-based deep-learning scatterer-density estimator using physically accurate noise model

Authors: Thitiya Seesan, Pradipta Mukherjee, Ibrahim Abd El-Sadek, Yiheng Lim, Lida Zhu, Shuichi Makita, Yoshiaki Yasuno

Journal-ref: Biomedical Optics Express 15, 2832-2848 (2024)

Subjects: Biological Physics (physics.bio-ph); Instrumentation and Detectors (physics.ins-det); Medical Physics (physics.med-ph); Optics (physics.optics)

[7]  arXiv:2403.00768 [pdf, ps, other]

Title: Adaptive Exponential Integrate-and-Fire Model with Fractal Extension

Authors: Diogo L. M. Souza, Enrique C. Gabrick, Paulo R. Protachevicz, Fernando S. Borges, José Trobia, Kelly C. Iarosz, Antonio M. Batista, Iberê L. Caldas, Ervin K. Lenzi

Journal-ref: Chaos 34 2024

Subjects: Biological Physics (physics.bio-ph); Adaptation and Self-Organizing Systems (nlin.AO)

[8]  arXiv:2403.01294 [pdf, other]

Title: Anomalous mass dependency in Hydra endoderm cell cluster diffusion

Authors: Aline Lütz, Carine Beatrici, Lívio Amaral, Leonardo Brunnet

Subjects: Biological Physics (physics.bio-ph)

[9]  arXiv:2403.01511 [pdf, other]

Title: Multiscale Biomolecular Simulations in the Exascale Era

Authors: David Carrasco-Busturia, Emiliano Ippoliti, Simone Meloni, Ursula Rothlisberger, Jógvan Magnus Haugaard Olsen

Subjects: Biological Physics (physics.bio-ph); Chemical Physics (physics.chem-ph)

[10]  arXiv:2403.01515 [pdf, other]

Title: Cell sorting by active forces in a phase-field model of cell monolayers

Authors: James N. Graham, Guanming Zhang, Julia M. Yeomans

Comments: 6 pages, 3 figures

Subjects: Biological Physics (physics.bio-ph); Soft Condensed Matter (cond-mat.soft)

[11]  arXiv:2403.02169 [pdf, ps, other]

Title: A theoretical basis for cell deaths

Authors: Yusuke Himeoka, Shuhei A. Horiguchi, Tetsuya J. Kobayashi

Subjects: Biological Physics (physics.bio-ph)

[12]  arXiv:2403.02838 [pdf, ps, other]

Title: A pH Sensor Scaffold for Mapping Spatiotemporal Gradients in Three Dimensional In Vitro Tumour Models

Authors: Riccardo Rizzo, Valentina Onesto, Stefania Forciniti, Anil Chandra, Saumya Prasad, Helena Iuele, Francesco Colella, Giuseppe Gigli, Loretta L. del Mercato

Journal-ref: Biosensors and Bioelectronics, 2022, 15, 114401

Subjects: Biological Physics (physics.bio-ph)

[13]  arXiv:2403.02943 [pdf, other]

Title: Transcription factor clusters as information transfer agents

Authors: Rahul Munshi, Jia Ling, Sergey Ryabichko, Eric F Wieschaus, Thomas Gregor

Comments: 28 pages, 19 figures including supplements

Subjects: Biological Physics (physics.bio-ph)

[14]  arXiv:2403.03093 [pdf, other]

Title: Collective self-caging of active filaments in virtual confinement

Authors: Maximilian Kurjahn, Leila Abbaspour, Franziska Papenfuß, Philip Bittihn, Ramin Golestanian, Benoît Mahault, Stefan Karpitschka

Comments: 14 pages, 4 figures, 5 supplementary figures, 4 supplementary videos

Subjects: Biological Physics (physics.bio-ph); Soft Condensed Matter (cond-mat.soft)

[15]  arXiv:2403.03369 [pdf, other]

Title: Action potentials in vitro: theory and experiment

Authors: Ziqi Pi, Giovanni Zocchi

Comments: 14 pages, 21 figures

Subjects: Biological Physics (physics.bio-ph); Mesoscale and Nanoscale Physics (cond-mat.mes-hall); Pattern Formation and Solitons (nlin.PS)

[16]  arXiv:2403.03398 [pdf, other]

Title: Energetic and Control Trade-offs in Spring-Wing Systems

Authors: James Lynch, Ethan S. Wold, Jeff Gau, Simon Sponberg, Nick Gravish

Subjects: Biological Physics (physics.bio-ph); Fluid Dynamics (physics.flu-dyn)

[17]  arXiv:2403.04187 [pdf, other]

Title: Preference optimization of protein language models as a multi-objective binder design paradigm

Authors: Pouria Mistani, Venkatesh Mysore

Comments: Published at the GEM workshop, ICLR 2024. Generative and Experimental Perspectives for Biomolecular Design (this https URL)

Subjects: Biological Physics (physics.bio-ph); Artificial Intelligence (cs.AI); Computational Engineering, Finance, and Science (cs.CE); Biomolecules (q-bio.BM)

[18]  arXiv:2403.04277 [pdf, ps, other]

Title: Multimodal Analysis of Traction Forces and Temperature Dynamics of Living Cells with Diamond-Embedded Substrate

Authors: Tomasz Kołodziej, Mariusz Mrózek, Saravanan Sengottuvel, Maciej J. Głowacki, Mateusz Ficek, Wojciech Gawlik, Zenon Rajfur, Adam Wojciechowski

Comments: 19 pages, 5 figures

Subjects: Biological Physics (physics.bio-ph)

[19]  arXiv:2403.04806 [pdf, ps, other]

Title: Unveiling nutrient flow mediated stress in the plant roots using on-chip phytofluidic device

Authors: Kaushal Agarwal, Sumit Kumar Mehta, Pranab Kumar Mondal

Comments: 14 pages, 6 figures

Subjects: Biological Physics (physics.bio-ph)

[20]  arXiv:2403.05276 [pdf, other]

Title: Role of tissue fluidization and topological defects in epithelial tubulogenesis

Authors: Richard D.J.G. Ho, Stig Ove Bøe, Dag Kristian Dysthe, Luiza Angheluta

Comments: 10 pages, 12 figures

Subjects: Biological Physics (physics.bio-ph)

[21]  arXiv:2403.05741 [pdf, ps, other]

Title: The Turing Pattern Transition with the Growing Domain and Metabolic Rate Effects

Authors: Shin Nishihara, Toru Ohira

Subjects: Biological Physics (physics.bio-ph)

[22]  arXiv:2403.08744 [pdf, ps, other]

Title: GTP before ATP: The energy currency at the origin of genes

Authors: Natalia Mrnjavac, William F. Martin

Comments: 27 pages, 5 figures, 2 tables

Subjects: Biological Physics (physics.bio-ph); Biomolecules (q-bio.BM); Populations and Evolution (q-bio.PE)

[23]  arXiv:2403.08954 [pdf, other]

Title: Morphological instability at topological defects in a three-dimensional vertex model for spherical epithelia

Authors: Oliver M. Drozdowski, Ulrich S. Schwarz (Heidelberg University, Germany)

Comments: 5 pages, 5 figures, supplemental material

Subjects: Biological Physics (physics.bio-ph); Soft Condensed Matter (cond-mat.soft); Tissues and Organs (q-bio.TO)

[24]  arXiv:2403.08964 [pdf, ps, other]

Title: Hyperelasticity of Blood Clots: Bridging the Gap between Microscopic and Continuum Scales

Authors: Nicholas Filla, Beikang Gu, Jixin Hou, Kenan Song, He Li, Ning Liu, Xianqiao Wang

Comments: 13 figures

Subjects: Biological Physics (physics.bio-ph); Medical Physics (physics.med-ph)

[25]  arXiv:2403.09068 [pdf, ps, other]

Title: Self-enhanced mobility enables vortex pattern formation in living matter

Authors: Haoran Xu, Yilin Wu

Journal-ref: Nature (2024)

Subjects: Biological Physics (physics.bio-ph); Soft Condensed Matter (cond-mat.soft); Fluid Dynamics (physics.flu-dyn)