Populations and Evolution

Authors and titles for q-bio.PE in Jul 2021

[1]  arXiv:2107.00474 [pdf, other]

Title: Epidemic processes with vaccination and immunity loss studied with the BLUES function method

Authors: Jonas Berx, Joseph O Indekeu

Comments: 23 pages, 8 figures. v2: Accepted version

Journal-ref: Physica A 590, 126724 (2022)

Subjects: Populations and Evolution (q-bio.PE)

[2]  arXiv:2107.00748 [pdf, other]

Title: Phylogenetic Diversity Rankings in the Face of Extinctions: the Robustness of the Fair Proportion Index

Authors: Mareike Fischer, Andrew Francis, Kristina Wicke

Subjects: Populations and Evolution (q-bio.PE); Combinatorics (math.CO)

[3]  arXiv:2107.00779 [pdf, other]

Title: Hypnozoite dynamics for Plasmodium vivax malaria: the epidemiological effects of radical cure

Authors: Somya Mehra, Eva Stadler, David Khoury, James M. McCaw, Jennifer A. Flegg

Subjects: Populations and Evolution (q-bio.PE)

[4]  arXiv:2107.00835 [pdf, other]

Title: From Epidemic to Pandemic Modelling

Authors: Shannon Connolly, David Gilbert, Monika Heiner

Comments: 79 pages (with Appendix), 23 figures, 7 tables

Subjects: Populations and Evolution (q-bio.PE); Computational Engineering, Finance, and Science (cs.CE)

[5]  arXiv:2107.01208 [pdf, ps, other]

Title: Preventing Covid59

Authors: Yaniv Erlich, Daniel Douek

Comments: 9 pages, 1 figure

Subjects: Populations and Evolution (q-bio.PE)

[6]  arXiv:2107.01246 [pdf, other]

Title: Principled, practical, flexible, fast: a new approach to phylogenetic factor analysis

Authors: Gabriel W. Hassler, Brigida Gallone, Leandro Aristide, William L. Allen, Max R. Tolkoff, Andrew J. Holbrook, Guy Baele, Philippe Lemey, Marc A. Suchard

Comments: 27 pages, 7 figures, 1 table

Subjects: Populations and Evolution (q-bio.PE); Applications (stat.AP); Methodology (stat.ME)

[7]  arXiv:2107.02430 [pdf, ps, other]

Title: Metapopulation dynamics of a respiratory disease with infection during travel

Authors: Indrajit Ghosh, Sk Shahid Nadim, Soumyendu Raha, Debnath Pal

Subjects: Populations and Evolution (q-bio.PE)

[8]  arXiv:2107.02835 [pdf, other]

Title: Pairwise Comparison Evolutionary Dynamics with Strategy-Dependent Revision Rates: Stability and Delta-Passivity (Expanded Version)

Authors: Semih Kara, Nuno C. Martins

Subjects: Populations and Evolution (q-bio.PE); Systems and Control (eess.SY); Dynamical Systems (math.DS); Optimization and Control (math.OC)

[9]  arXiv:2107.02962 [pdf, other]

Title: Transmission Dynamics of COVID-19 Pandemic Non-pharmaceutical Interventions and Vaccination

Authors: Bin-Guo Wang, Shunxiang Huang, Yongping Xiong, Ming-Zhen Xin, Jing LI, Jiangqian Zhang, Zhihui Ma

Subjects: Populations and Evolution (q-bio.PE); Dynamical Systems (math.DS)

[10]  arXiv:2107.03307 [pdf, other]

Title: Ecosystems are showing symptoms of resilience loss

Authors: Juan C. Rocha

Comments: 19 pages (including SM), 7 figures on main text, 7 SM figures

Subjects: Populations and Evolution (q-bio.PE); Physics and Society (physics.soc-ph)

[11]  arXiv:2107.03334 [pdf, other]

Title: Predicting the diversity of early epidemic spread on networks

Authors: Andrea J. Allen, Mariah C. Boudreau, Nicholas J. Roberts, Antoine Allard, Laurent Hébert-Dufresne

Journal-ref: Phys. Rev. Research 4, 013123 (2022)

Subjects: Populations and Evolution (q-bio.PE); Physics and Society (physics.soc-ph)

[12]  arXiv:2107.04421 [pdf, other]

Title: Impact of parity in rock-paper-scissors type models

Authors: P. P. Avelino, B. F. de Oliveira, R. S. Trintin

Comments: 7 pages, 7 figures

Subjects: Populations and Evolution (q-bio.PE); Statistical Mechanics (cond-mat.stat-mech); Physics and Society (physics.soc-ph)

[13]  arXiv:2107.05579 [pdf, other]

Title: Unifying incidence and prevalence under a time-varying general branching process

Authors: Mikko S. Pakkanen, Xenia Miscouridou, Matthew J. Penn, Charles Whittaker, Tresnia Berah, Swapnil Mishra, Thomas A. Mellan, Samir Bhatt

Comments: 35 pages, 4 figures, v4: major revision, including a new argument for the equivalence of incidence equations

Subjects: Populations and Evolution (q-bio.PE); Probability (math.PR); Quantitative Methods (q-bio.QM); Applications (stat.AP)

[14]  arXiv:2107.05610 [pdf, ps, other]

Title: The Fundamental Theorem of Natural Selection

Authors: John C. Baez

Comments: 6 pages

Subjects: Populations and Evolution (q-bio.PE); Information Theory (cs.IT)

[15]  arXiv:2107.05740 [pdf, other]

Title: Wavelet Analysis of Dengue Incidence and its Correlation with Weather and Vegetation Variables in Costa Rica

Authors: Yury E. García, Luis A. Barboza, Fabio Sanchez, Paola Vásquez, Juan G. Calvo

Comments: 46 pages, 6 Figures

Subjects: Populations and Evolution (q-bio.PE)

[16]  arXiv:2107.06025 [pdf, other]

Title: Statistics of the number of equilibria in random social dilemma evolutionary games with mutation

Authors: Manh Hong Duong, The Anh Han

Comments: 17 pages

Subjects: Populations and Evolution (q-bio.PE); Dynamical Systems (math.DS); Probability (math.PR)

[17]  arXiv:2107.06545 [pdf, other]

Title: Total Effect Analysis of Vaccination on Household Transmission in the Office for National Statistics COVID-19 Infection Survey

Authors: Thomas House, Lorenzo Pellis, Emma Pritchard, Angela R. McLean, A. Sarah Walker

Comments: 5 pages, 2 figures

Subjects: Populations and Evolution (q-bio.PE); Applications (stat.AP)

[18]  arXiv:2107.06617 [pdf, other]

Title: Simulating transmission scenarios of the Delta variant of SARS-CoV-2 in Australia

Authors: Sheryl L. Chang, Oliver M. Cliff, Cameron Zachreson, Mikhail Prokopenko

Comments: 36 pages, 15 figures, published in "Frontiers in Public Health", 24 February 2022

Journal-ref: Frontiers in Public Health, 10 (2022)

Subjects: Populations and Evolution (q-bio.PE); Multiagent Systems (cs.MA)

[19]  arXiv:2107.06823 [pdf, ps, other]

Title: The evolution of the GALactose utilization pathway in budding yeasts

Authors: Marie-Claire Harrison, Abigail L. LaBella, Chris Todd Hittinger, Antonis Rokas

Subjects: Populations and Evolution (q-bio.PE)

[20]  arXiv:2107.07574 [pdf, other]

Title: Eco-evolutionary dynamics of cooperation in the presence of policing

Authors: Sayantan Nag Chowdhury, Srilena Kundu, Jeet Banerjee, Matjaž Perc, Dibakar Ghosh

Journal-ref: J. Theor. Biol. 518, 110606 (2021)

Subjects: Populations and Evolution (q-bio.PE); Physics and Society (physics.soc-ph)

[21]  arXiv:2107.07834 [pdf, other]

Title: On the Complexity of Optimising Variants of Phylogenetic Diversity on Phylogenetic Networks

Authors: Magnus Bordewich, Charles Semple, Kristina Wicke

Comments: 22 pages, 4 figures

Subjects: Populations and Evolution (q-bio.PE); Combinatorics (math.CO)

[22]  arXiv:2107.07938 [pdf, other]

Title: Modeling cooperation and competition in biological communities

Authors: F. Meloni, G. Nakamura, B. Grammaticos, A. S. Martinez, M. Badoual

Comments: 24 pages, 16 figures

Subjects: Populations and Evolution (q-bio.PE)

[23]  arXiv:2107.08010 [pdf, other]

Title: Strong, recent selective sweeps reshape genetic diversity in freshwater bivalve Megalonaias nervosa

Authors: Rebekah L. Rogers, Stephanie L. Grizzard, Jeffrey T. Garner

Comments: 7 figures, 6 supplementary tables, 21 supplementary figures. 60 pages total

Subjects: Populations and Evolution (q-bio.PE); Genomics (q-bio.GN)

[24]  arXiv:2107.08259 [pdf, other]

Title: Testing and Isolation Efficacy: Insights from a Simple Epidemic Model

Authors: Ali Gharouni, F.M. Abdelmalek, David J. D. Earn, Jonathan Dushoff, Benjamin M. Bolker

Subjects: Populations and Evolution (q-bio.PE); Dynamical Systems (math.DS); Physics and Society (physics.soc-ph)

[25]  arXiv:2107.08926 [pdf, other]

Title: Effects of a pestilent species on the stability of cyclically dominant species

Authors: D. Bazeia, M. Bongestab, B.F. de Oliveira, A. Szolnoki

Comments: 10 two-column pages, 7 figures, accepted for publication in Chaos, Solitons, and Fractals

Journal-ref: Chaos, Solitons and Fractals 151 (2021) 111255

Subjects: Populations and Evolution (q-bio.PE); Statistical Mechanics (cond-mat.stat-mech)