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Populations and Evolution

Authors and titles for q-bio.PE in Nov 2022

[ total of 64 entries: 1-64 ]
[ showing 64 entries per page: fewer | more ]
[1]  arXiv:2211.00581 [pdf, ps, other]
Title: Evolutionary Innovation by Polyploidy
Comments: 10 pages, 5 figures, 1 tables
Subjects: Populations and Evolution (q-bio.PE); Biological Physics (physics.bio-ph)
[2]  arXiv:2211.00605 [pdf, other]
Title: Verifying a stochastic model for the spread of a SARS-CoV-2-like infection: opportunities and limitations
Comments: Accepted for pubblication in AIxIA 2022
Subjects: Populations and Evolution (q-bio.PE); Formal Languages and Automata Theory (cs.FL); Physics and Society (physics.soc-ph)
[3]  arXiv:2211.00712 [pdf, other]
Title: Detectability of Varied Hybridization Scenarios using Genome-Scale Hybrid Detection Methods
Subjects: Populations and Evolution (q-bio.PE)
[4]  arXiv:2211.02168 [pdf, other]
Title: Automatic differentiation is no panacea for phylogenetic gradient computation
Comments: 17 pages and 2 figures in main text, plus supplementary materials
Subjects: Populations and Evolution (q-bio.PE)
[5]  arXiv:2211.02358 [pdf, other]
Title: An approach for benchmarking the numerical solutions of stochastic compartmental models
Comments: 21 pages 3 figures
Subjects: Populations and Evolution (q-bio.PE); Applications (stat.AP)
[6]  arXiv:2211.03312 [pdf, other]
Title: Optimal intercellular competition in senescence and cancer
Comments: Some minor typographical errors fixed
Subjects: Populations and Evolution (q-bio.PE)
[7]  arXiv:2211.03515 [pdf, other]
Title: The infinitesimal model with dominance
Comments: 68 pages, 9 figures. To appear in Genetics
Subjects: Populations and Evolution (q-bio.PE); Probability (math.PR)
[8]  arXiv:2211.03632 [pdf, other]
Title: On the enumeration of leaf-labelled increasing trees with arbitrary node-degree
Authors: Johannes Wirtz
Subjects: Populations and Evolution (q-bio.PE); Combinatorics (math.CO)
[9]  arXiv:2211.04283 [pdf, other]
Title: Modified SIS model applied to a Zombie apocalypse with terminators
Comments: 8 pages, in Portuguese, 10 figures, conference paper
Subjects: Populations and Evolution (q-bio.PE); Physics and Society (physics.soc-ph)
[10]  arXiv:2211.04730 [pdf, other]
Title: Inferring the ecology of north-Pacific albacore tuna from catch-and-effort data
Comments: 9 pages, 4 figures
Subjects: Populations and Evolution (q-bio.PE); Quantitative Methods (q-bio.QM)
[11]  arXiv:2211.04843 [pdf, other]
Title: SPRINT: A fast, new software tool for reconstructing the evolutionary past of polyploid datasets
Comments: 4 pages, 2 figures
Subjects: Populations and Evolution (q-bio.PE)
[12]  arXiv:2211.05032 [pdf, other]
Title: Evolution with recombination as a Metropolis-Hastings sampling procedure
Subjects: Populations and Evolution (q-bio.PE)
[13]  arXiv:2211.05220 [pdf, other]
Title: TreeFlow: probabilistic programming and automatic differentiation for phylogenetics
Comments: 34 pages, 8 figures
Subjects: Populations and Evolution (q-bio.PE); Computation (stat.CO)
[14]  arXiv:2211.05469 [pdf, other]
Title: Estimating cross-border mobility from the difference in peak-timing: A case study in Poland-Germany border regions
Comments: Added Reference (Abdussalam et al. (2022) in Section 3
Subjects: Populations and Evolution (q-bio.PE); Physics and Society (physics.soc-ph)
[15]  arXiv:2211.05653 [pdf, other]
Title: Unifying the communicable disease spreading paradigm with Gompertzian growth
Comments: 17 pages, 3 figures
Subjects: Populations and Evolution (q-bio.PE); Physics and Society (physics.soc-ph)
[16]  arXiv:2211.08076 [pdf, ps, other]
Title: Association of vaccine-induced or hybrid immunity with COVID-19-related mortality during the Omicron wave -- a retrospective observational study in elderly Bavarians
Authors: Maximilian Weigert (1), Andreas Beyerlein (2), Katharina Katz (2), Rickmer Schulte (1), Wolfgang Hartl (3), Helmut Küchenhoff (1) ((1) Statistical Consulting Unit StaBLab, Department of Statistics, Ludwig-Maximilians-Universität Munich, Germany, (2) Bavarian Health and Food Safety Authority, Oberschleißheim, Germany, (3) Division of Surgical Critical Care, Department of General, Visceral, and Transplantation Surgery, University Medical Center, Campus Grosshadern, Ludwig-Maximilians-Universität Munich, Germany)
Subjects: Populations and Evolution (q-bio.PE)
[17]  arXiv:2211.08208 [pdf, other]
Title: Variations of the SIR model for COVID-19 evolution
Comments: 10 pages, 28 figures
Subjects: Populations and Evolution (q-bio.PE)
[18]  arXiv:2211.08503 [pdf, other]
Title: Nonlocal Mechanistic Models in Ecology: Numerical Methods and Parameter Inferencing
Comments: 29 pages, 21 figures
Subjects: Populations and Evolution (q-bio.PE)
[19]  arXiv:2211.08516 [pdf, other]
Title: Phenotype Search Trajectory Networks for Linear Genetic Programming
Subjects: Populations and Evolution (q-bio.PE); Artificial Intelligence (cs.AI)
[20]  arXiv:2211.08522 [pdf, other]
Title: The scaling of goals via homeostasis: an evolutionary simulation, experiment and analysis
Comments: 27 pages, 11 Figures, 2 Algorithms
Subjects: Populations and Evolution (q-bio.PE); Multiagent Systems (cs.MA); Neural and Evolutionary Computing (cs.NE); Tissues and Organs (q-bio.TO)
[21]  arXiv:2211.08558 [pdf, other]
Title: Environmental toxicity influences disease spread in consumer population
Subjects: Populations and Evolution (q-bio.PE)
[22]  arXiv:2211.08673 [pdf, other]
Title: Correlation of viral loads in disease transmission chains could bias early estimates of the reproduction number
Subjects: Populations and Evolution (q-bio.PE)
[23]  arXiv:2211.08797 [pdf, ps, other]
Title: Assessing potential insights of an imperfect testing strategy: Parameter estimation and practical identifiability using early COVID-19 data in India
Subjects: Populations and Evolution (q-bio.PE); Physics and Society (physics.soc-ph)
[24]  arXiv:2211.09005 [pdf, other]
Title: Endemic Oscillations for SARS-CoV-2 Omicron -- A SIRS model analysis
Authors: Florian Nill
Comments: 19 pages, 9 figures
Journal-ref: Chaos, Solitons and Fractals 173 (2023) 113678
Subjects: Populations and Evolution (q-bio.PE); Dynamical Systems (math.DS); Physics and Society (physics.soc-ph)
[25]  arXiv:2211.09010 [pdf, other]
Title: Modeling Insights from COVID-19 Incidence Data: Part I -- Comparing COVID-19 Cases Between Different-Sized Populations
Subjects: Populations and Evolution (q-bio.PE)
[26]  arXiv:2211.09062 [pdf, ps, other]
Title: Extending SIRS epidemics to allow for gradual waning of immunity
Subjects: Populations and Evolution (q-bio.PE)
[27]  arXiv:2211.09276 [pdf, other]
Title: Lotka-Volterra predator-prey model with periodically varying carrying capacity
Authors: Mohamed Swailem, Uwe C. Täuber (Virginia Tech)
Comments: 18 pages, 20 figures, to appear in Phys. Rev. E (2023)
Journal-ref: Phys. Rev. E 107 (2023) 064144
Subjects: Populations and Evolution (q-bio.PE); Statistical Mechanics (cond-mat.stat-mech)
[28]  arXiv:2211.10965 [pdf, other]
Title: Persistence of the Omicron variant of SARS-CoV-2 in Australia: The impact of fluctuating social distancing
Comments: 30 pages, 12 figures, source code: this https URL
Subjects: Populations and Evolution (q-bio.PE); Multiagent Systems (cs.MA)
[29]  arXiv:2211.11919 [pdf, other]
Title: Statistical learning with phylogenetic network invariants
Comments: 27 pages, 8 figures
Subjects: Populations and Evolution (q-bio.PE)
[30]  arXiv:2211.12083 [pdf, other]
Title: Investigating factors behind the outbreak of the 6th and the 7th waves of COVID-19 in Tokyo
Authors: Yoshihiko Takase
Comments: 10 pages, 15 PDF figures
Subjects: Populations and Evolution (q-bio.PE); Physics and Society (physics.soc-ph)
[31]  arXiv:2211.12395 [pdf, other]
Title: Reconstruction of the temporal correlation network of all-cause mortality fluctuation across Italian regions: the importance of temperature and among-nodes flux
Comments: For (Python + Pandas + Jax) code, see this https URL
Subjects: Populations and Evolution (q-bio.PE); Statistical Mechanics (cond-mat.stat-mech); Physics and Society (physics.soc-ph)
[32]  arXiv:2211.12856 [pdf, ps, other]
Title: Experimentos sobre la Hibridación en Plantas
Authors: Gregor Mendel (translated by Juan Rojas-García and Rafael Navajas-Pérez)
Comments: in Spanish language
Subjects: Populations and Evolution (q-bio.PE)
[33]  arXiv:2211.12949 [pdf, other]
Title: Feasibility and stability in large Lotka Volterra systems with interaction structure
Comments: Manuscript is 8 pages long, containing 4 figures. Pages 9 to 25 is the Supplemental Material
Subjects: Populations and Evolution (q-bio.PE)
[34]  arXiv:2211.13673 [pdf, ps, other]
Title: Long-Term Decrease in Coloration: A Consequence of Climate Change?
Journal-ref: The American Naturalist, 2022, 200 (1), pp.32-47
Subjects: Populations and Evolution (q-bio.PE)
[35]  arXiv:2211.13704 [pdf, other]
Title: Modelling plausible scenarios for the Omicron SARS-CoV-2 variant from early-stage surveillance
Subjects: Populations and Evolution (q-bio.PE); Physics and Society (physics.soc-ph)
[36]  arXiv:2211.14676 [pdf, other]
Title: Maximizing the Probability of Fixation in the Positional Voter Model
Comments: Accepted for publication in AAAI 2023
Subjects: Populations and Evolution (q-bio.PE); Computational Complexity (cs.CC); Computer Science and Game Theory (cs.GT); Social and Information Networks (cs.SI)
[37]  arXiv:2211.15283 [pdf, other]
Title: Double-replica theory for evolution of genotype-phenotype interrelationship
Comments: 15 pages, 7 figures
Subjects: Populations and Evolution (q-bio.PE); Disordered Systems and Neural Networks (cond-mat.dis-nn); Statistical Mechanics (cond-mat.stat-mech)
[38]  arXiv:2211.16638 [pdf, other]
Title: On the dynamics of mortality and the ephemeral nature of mammalian megafauna
Comments: 10 pages, 5 figures, 1 table, 4 appendices, 8 supplementary figures
Subjects: Populations and Evolution (q-bio.PE)
[39]  arXiv:2211.16647 [pdf, other]
Title: Ultrafast learning of 4-node hybridization cycles in phylogenetic networks using algebraic invariants
Subjects: Populations and Evolution (q-bio.PE); Algebraic Geometry (math.AG); Applications (stat.AP)
[40]  arXiv:2211.06426 (cross-list from q-bio.QM) [pdf, other]
Title: Clustering of countries based on the associated social contact patterns in epidemiological modelling
Subjects: Quantitative Methods (q-bio.QM); Machine Learning (cs.LG); Physics and Society (physics.soc-ph); Populations and Evolution (q-bio.PE); Applications (stat.AP); Methodology (stat.ME)
[41]  arXiv:2211.00054 (cross-list from stat.AP) [pdf, other]
Title: The interaction of transmission intensity, mortality, and the economy: a retrospective analysis of the COVID-19 pandemic
Subjects: Applications (stat.AP); Machine Learning (cs.LG); Populations and Evolution (q-bio.PE)
[42]  arXiv:2211.00169 (cross-list from math.OC) [pdf, other]
Title: SIS Epidemic Spreading under Multi-layer Population Dispersal in Patchy Environments
Comments: Extended version of a journal paper under review. arXiv admin note: substantial text overlap with arXiv:2003.06341, arXiv:1909.02647
Subjects: Optimization and Control (math.OC); Systems and Control (eess.SY); Populations and Evolution (q-bio.PE)
[43]  arXiv:2211.02407 (cross-list from math.PR) [pdf, other]
Title: A branching process with coalescence to model random phylogenetic networks
Journal-ref: Electron. J. Probab. 29:1-48 (2024)
Subjects: Probability (math.PR); Populations and Evolution (q-bio.PE)
[44]  arXiv:2211.02537 (cross-list from cs.CV) [pdf, other]
Title: Machine Learning Challenges of Biological Factors in Insect Image Data
Comments: 4 pages, 3 figures. Submitted to the Journal of Computational Vision and Imaging Systems
Subjects: Computer Vision and Pattern Recognition (cs.CV); Populations and Evolution (q-bio.PE)
[45]  arXiv:2211.02917 (cross-list from cond-mat.stat-mech) [pdf, other]
Title: SIS model of disease extinction on heterogeneous directed population networks
Comments: 10 pages, 8 figures. To appear in Phys. Rev. E (2022)
Subjects: Statistical Mechanics (cond-mat.stat-mech); Computational Physics (physics.comp-ph); Populations and Evolution (q-bio.PE)
[46]  arXiv:2211.03879 (cross-list from physics.bio-ph) [pdf, other]
Title: Phase Transitions and Criticality in the Collective Behavior of Animals -- Self-organization and biological function
Comments: to appear in "Order, disorder, and criticality", vol. VII, World Scientific Publishing
Subjects: Biological Physics (physics.bio-ph); Soft Condensed Matter (cond-mat.soft); Populations and Evolution (q-bio.PE); Quantitative Methods (q-bio.QM)
[47]  arXiv:2211.04186 (cross-list from physics.bio-ph) [pdf, other]
Title: Various Logistic Curves in SIS and SIR Models
Comments: 9 pages, 6 fugures
Journal-ref: European Journal of Mathematics and Statistics, Vol.4(2023), 1-6
Subjects: Biological Physics (physics.bio-ph); Physics and Society (physics.soc-ph); Populations and Evolution (q-bio.PE)
[48]  arXiv:2211.04563 (cross-list from math.PR) [pdf, ps, other]
Title: A measure-valued stochastic model for vector-borne viruses
Comments: 39 pages
Subjects: Probability (math.PR); Populations and Evolution (q-bio.PE)
[49]  arXiv:2211.05859 (cross-list from math.PR) [pdf, other]
Title: A model of seasonal savanna dynamics
Comments: 22 pages, 3 figures
Journal-ref: SIAM J. Appl. Math. 83 (2023), no. 1, 122-143
Subjects: Probability (math.PR); Populations and Evolution (q-bio.PE)
[50]  arXiv:2211.06295 (cross-list from cs.CY) [pdf, ps, other]
Title: A novel approach to preventing SARS-CoV-2 transmission in classrooms: An OpenFOAM based CFD Study
Subjects: Computers and Society (cs.CY); Fluid Dynamics (physics.flu-dyn); Populations and Evolution (q-bio.PE); Quantitative Methods (q-bio.QM)
[51]  arXiv:2211.06328 (cross-list from math.CO) [pdf, ps, other]
Title: Parametric Fermat-Weber and tropical supertrees
Comments: 13 pages, 1 figure
Subjects: Combinatorics (math.CO); Metric Geometry (math.MG); Populations and Evolution (q-bio.PE)
[52]  arXiv:2211.06549 (cross-list from math.CO) [pdf, other]
Title: Hypercubes and Hamilton cycles of display sets of rooted phylogenetic networks
Comments: final version of accepted manuscript
Journal-ref: Advances in Applied Mathematics, 152:102595, 2024
Subjects: Combinatorics (math.CO); Data Structures and Algorithms (cs.DS); Populations and Evolution (q-bio.PE)
[53]  arXiv:2211.06928 (cross-list from quant-ph) [pdf, other]
Title: Quantum versus Population Dynamics over Cayley Graphs
Authors: Emil Prodan
Journal-ref: Annals of Physics 457, 169430 (2023)
Subjects: Quantum Physics (quant-ph); Other Condensed Matter (cond-mat.other); Populations and Evolution (q-bio.PE)
[54]  arXiv:2211.07476 (cross-list from physics.soc-ph) [pdf, ps, other]
Title: The effect of cities and distance on COVID-19 spreading in the United States
Comments: 18 pages, 7 figures
Subjects: Physics and Society (physics.soc-ph); Populations and Evolution (q-bio.PE)
[55]  arXiv:2211.07780 (cross-list from nlin.SI) [pdf, ps, other]
Title: A hunter-gatherer-farmer population model: new conditional symmetries and exact solutions with biological interpretation
Subjects: Exactly Solvable and Integrable Systems (nlin.SI); Populations and Evolution (q-bio.PE)
[56]  arXiv:2211.08277 (cross-list from cs.LG) [pdf, other]
Title: SPADE4: Sparsity and Delay Embedding based Forecasting of Epidemics
Comments: 24 pages, 13 figures, 2 tables
Journal-ref: Bull.Math.Bio.85.8 (2023) 71
Subjects: Machine Learning (cs.LG); Physics and Society (physics.soc-ph); Populations and Evolution (q-bio.PE)
[57]  arXiv:2211.09531 (cross-list from physics.bio-ph) [pdf, other]
Title: Cross-inhibition leads to group consensus despite the presence of strongly opinionated minorities and asocial behaviour
Subjects: Biological Physics (physics.bio-ph); Multiagent Systems (cs.MA); Analysis of PDEs (math.AP); Populations and Evolution (q-bio.PE)
[58]  arXiv:2211.09872 (cross-list from physics.soc-ph) [pdf, other]
Title: Invasion of optimal social contracts
Subjects: Physics and Society (physics.soc-ph); Statistical Mechanics (cond-mat.stat-mech); Populations and Evolution (q-bio.PE)
[59]  arXiv:2211.10926 (cross-list from stat.AP) [pdf, other]
Title: Unraveling implicit human behavioral effects on dynamic characteristics of Covid-19 daily infection rates in Taiwan
Subjects: Applications (stat.AP); Physics and Society (physics.soc-ph); Populations and Evolution (q-bio.PE)
[60]  arXiv:2211.11862 (cross-list from math.OC) [pdf, other]
Title: The effective reproduction number: convexity, concavity and invariance
Comments: 20 pages, 6 figures. arXiv admin note: substantial text overlap with arXiv:2110.12693
Subjects: Optimization and Control (math.OC); Populations and Evolution (q-bio.PE)
[61]  arXiv:2211.12869 (cross-list from math.PR) [pdf, other]
Title: Epidemic models with digital and manual contact tracing
Subjects: Probability (math.PR); Populations and Evolution (q-bio.PE)
[62]  arXiv:2211.13943 (cross-list from physics.soc-ph) [pdf, other]
Title: Simple bots breed social punishment in humans
Comments: 12 pages, 4 figures
Journal-ref: Journal of the Royal Society Interface 21 (2024) 20240019
Subjects: Physics and Society (physics.soc-ph); Populations and Evolution (q-bio.PE)
[63]  arXiv:2211.15229 (cross-list from stat.CO) [pdf, ps, other]
Title: Bayesian analysis of diffusion-driven multi-type epidemic models with application to COVID-19
Comments: Supplementary material attached. To view attachments, please download and extract the gzipped tar source file listed under "Ancillary files"
Subjects: Computation (stat.CO); Physics and Society (physics.soc-ph); Populations and Evolution (q-bio.PE); Applications (stat.AP)
[64]  arXiv:2211.15463 (cross-list from math.DS) [pdf, other]
Title: Vaccinating according to the maximal endemic equilibrium achieves herd immunity
Comments: arXiv admin note: substantial text overlap with arXiv:2103.10330
Subjects: Dynamical Systems (math.DS); Analysis of PDEs (math.AP); Populations and Evolution (q-bio.PE)
[ total of 64 entries: 1-64 ]
[ showing 64 entries per page: fewer | more ]

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