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Quantitative Biology

Authors and titles for recent submissions

[ total of 78 entries: 1-25 | 26-50 | 51-75 | 76-78 ]
[ showing 25 entries per page: fewer | more | all ]

Wed, 8 May 2024

[1]  arXiv:2405.04248 [pdf, ps, other]
Title: Neurocomputational Phenotypes in Female and Male Autistic Individuals
Authors: Michelle McCleod, Sean Borneman, Evie Malaia
Comments: 10 pages, 2 figures, 4 tables. Submitted to Journal of Science and Health, University of Alabama
Subjects: Neurons and Cognition (q-bio.NC); Chaotic Dynamics (nlin.CD)
[2]  arXiv:2405.04011 [pdf, other]
Title: Adjoint Sensitivity Analysis on Multi-Scale Bioprocess Stochastic Reaction Network
Authors: Keilung Choy, Wei Xie
Comments: 11 pages, 2 figures
Subjects: Molecular Networks (q-bio.MN); Machine Learning (stat.ML)
[3]  arXiv:2405.03913 [pdf, other]
Title: Digital Twin Calibration for Biological System-of-Systems: Cell Culture Manufacturing Process
Authors: Fuqiang Cheng, Wei Xie, Hua Zheng
Comments: 12 pages, 5 figures
Subjects: Quantitative Methods (q-bio.QM); Machine Learning (cs.LG); Machine Learning (stat.ML)
[4]  arXiv:2405.03861 [pdf, other]
Title: Homeostasis in Input-Output Networks: Structure, Classification and Applications
Authors: Fernando Antoneli, Martin Golubitsky, Jiaxin Jin, Ian Stewart
Comments: 45 pages, 26 figures, submitted to the MBS special issue "Dynamical Systems in Life Sciences"
Subjects: Molecular Networks (q-bio.MN); Combinatorics (math.CO); Dynamical Systems (math.DS); Biological Physics (physics.bio-ph)
[5]  arXiv:2405.03829 [pdf, other]
Title: Unsupervised Machine Learning Identifies Latent Ultradian States in Multi-Modal Wearable Sensor Signals
Authors: Christopher Thornton, Billy C. Smith, Guillermo M. Besne, Bethany Little, Yujiang Wang
Subjects: Neurons and Cognition (q-bio.NC)
[6]  arXiv:2405.03726 [pdf, ps, other]
Title: sc-OTGM: Single-Cell Perturbation Modeling by Solving Optimal Mass Transport on the Manifold of Gaussian Mixtures
Authors: Andac Demir, Elizaveta Solovyeva, James Boylan, Mei Xiao, Fabrizio Serluca, Sebastian Hoersch, Jeremy Jenkins, Murthy Devarakonda, Bulent Kiziltan
Comments: ICLR 2024, Machine Learning for Genomics Explorations Workshop
Subjects: Genomics (q-bio.GN); Machine Learning (cs.LG)
[7]  arXiv:2405.03707 [pdf, ps, other]
Title: Quantifying indirect and direct vaccination effects arising in the SIR model
Authors: Lixin Lin, Homayoun Hamedmoghadam, Robert Shorten, Lewi Stone
Subjects: Populations and Evolution (q-bio.PE)
[8]  arXiv:2405.04078 (cross-list from cs.LG) [pdf, other]
Title: WISER: Weak supervISion and supErvised Representation learning to improve drug response prediction in cancer
Authors: Kumar Shubham, Aishwarya Jayagopal, Syed Mohammed Danish, Prathosh AP, Vaibhav Rajan
Comments: ICML 2024
Subjects: Machine Learning (cs.LG); Artificial Intelligence (cs.AI); Quantitative Methods (q-bio.QM)
[9]  arXiv:2405.03931 (cross-list from math.DS) [pdf, ps, other]
Title: Incorporating changeable attitudes toward vaccination into an SIR infectious disease model
Authors: Yi Jiang, Kristin M. Kurianski, Jane H. Lee, Yanping Ma, Daniel Cicala, Glenn Ledder
Comments: 30 pages, 3 tables, 10 figures
Subjects: Dynamical Systems (math.DS); Populations and Evolution (q-bio.PE)
[10]  arXiv:2405.03879 (cross-list from stat.ML) [pdf, other]
Title: Scalable Amortized GPLVMs for Single Cell Transcriptomics Data
Authors: Sarah Zhao, Aditya Ravuri, Vidhi Lalchand, Neil D. Lawrence
Subjects: Machine Learning (stat.ML); Machine Learning (cs.LG); Genomics (q-bio.GN); Applications (stat.AP)
[11]  arXiv:2405.03799 (cross-list from cs.LG) [pdf, other]
Title: Synthetic Data from Diffusion Models Improve Drug Discovery Prediction
Authors: Bing Hu, Ashish Saragadam, Anita Layton, Helen Chen
Subjects: Machine Learning (cs.LG); Artificial Intelligence (cs.AI); Quantitative Methods (q-bio.QM)

Tue, 7 May 2024 (showing first 14 of 20 entries)

[12]  arXiv:2405.03602 [pdf, other]
Title: One nose but two nostrils: Learn to align with sparse connections between two olfactory cortices
Authors: Bo Liu, Shanshan Qin, Venkatesh Murthy, Yuhai Tu
Subjects: Neurons and Cognition (q-bio.NC); Biological Physics (physics.bio-ph)
[13]  arXiv:2405.03601 [pdf, other]
Title: Firing rate model for brain rhythms controlled by astrocytes
Authors: Sergey V. Stasenko, Sergey M. Olenin, Eugene A. Grines, Tatiana A. Levanova
Comments: 12 pages, 4 figures
Subjects: Neurons and Cognition (q-bio.NC)
[14]  arXiv:2405.03370 [pdf, other]
Title: AntiFold: Improved antibody structure-based design using inverse folding
Authors: Magnus Haraldson Høie, Alissa Hummer, Tobias H. Olsen, Broncio Aguilar-Sanjuan, Morten Nielsen, Charlotte M. Deane
Subjects: Biomolecules (q-bio.BM); Quantitative Methods (q-bio.QM)
[15]  arXiv:2405.03346 [pdf, other]
Title: Population dynamics and games of variable size
Authors: Matheus Hansen, Fabio A. C. C. Chalub
Comments: 24 pages, 4 figures
Journal-ref: Matheus Hansen, Fabio A. C. C. Chalub. Population dynamics and games of variable size. Journal of Theoretical Biology 589, 111842, 2024
Subjects: Populations and Evolution (q-bio.PE)
[16]  arXiv:2405.03148 [pdf, other]
Title: Counting Subnetworks Under Gene Duplication in Genetic Regulatory Networks
Authors: Ashley Scruse, Jonathan Arnold, Robert Robinson
Subjects: Molecular Networks (q-bio.MN); Combinatorics (math.CO)
[17]  arXiv:2405.02853 [pdf, ps, other]
Title: Development and validation of a short form of the medication literacy scale for Chinese College Students
Authors: Chen Zhenzhen (1,2), Ren Jiabao (1,2), Duan Tingyu (3), Chen Ke (4), Hou Ruyi (5), Li Yimiao (5), Zeng Leixiao (5), Meng Xiaoxuan (6), Wu Yibo (7), Liu Yu (2), ((1) College of Science, Minzu University of China, Beijing, China, (2) School of Nursing, China Medical University, Shenyang, Liaoning Province, China, (3) Hebei Institute of Communications, Hebei, China, (4) Department of Social Science and Humanities, Harbin Medical University, Harbin, Heilongjiang Province, China, (5) School of Journalism and Communication, Renmin University of China, Beijing, China, (6) Tianjin Medical University, Tianjin, China, (7) School of Public Health, Peking University, Beijing, China)
Comments: 25 pages, 3 figures,3 tables
Subjects: Other Quantitative Biology (q-bio.OT)
[18]  arXiv:2405.02820 [pdf, other]
Title: Coat stiffening explains the consensus pathway of clathrin-mediated endocytosis
Authors: Felix Frey (IST Austria), Ulrich S. Schwarz (Heidelberg University)
Comments: revtex, 12 pages, 5 figures in PDF-format
Subjects: Subcellular Processes (q-bio.SC); Soft Condensed Matter (cond-mat.soft)
[19]  arXiv:2405.02786 [pdf, other]
Title: A causal inference approach of monosynapses from spike trains
Authors: Zach Saccomano, Sam Mckenzie, Horacio Rotstein, Asohan Amarasingham
Subjects: Neurons and Cognition (q-bio.NC)
[20]  arXiv:2405.02767 [pdf, ps, other]
Title: A Decade in a Systematic Review: The Evolution and Impact of Cell Painting
Authors: Srijit Seal, Maria-Anna Trapotsi, Ola Spjuth, Shantanu Singh, Jordi Carreras-Puigvert, Nigel Greene, Andreas Bender, Anne E. Carpenter
Comments: Supplementary Table/Code here: this https URL
Subjects: Subcellular Processes (q-bio.SC); Cell Behavior (q-bio.CB)
[21]  arXiv:2405.02674 [pdf, other]
Title: Ambush strategy enhances organisms' performance in rock-paper-scissors games
Authors: R. Barbalho, S. Rodrigues, M. Tenorio, J. Menezes
Comments: 8 pages, 5 figures
Subjects: Populations and Evolution (q-bio.PE); Adaptation and Self-Organizing Systems (nlin.AO); Pattern Formation and Solitons (nlin.PS); Biological Physics (physics.bio-ph); Quantitative Methods (q-bio.QM)
[22]  arXiv:2405.02593 [pdf, ps, other]
Title: An Interdisciplinary Perspective of the Built-Environment Microbiome
Authors: John S. McAlister, Michael J. Blum, Yana Bromberg, Nina H. Fefferman, Qiang He, Eric Lofgren, Debra L. Miller, Courtney Schreiner, K. Selcuk Candan, Heather Szabo-Rogers, J. Michael Reed
Comments: 23 pages
Subjects: Populations and Evolution (q-bio.PE)
[23]  arXiv:2405.02524 [pdf, other]
Title: Simulation-based Inference of Developmental EEG Maturation with the Spectral Graph Model
Authors: Danilo Bernardo, Xihe Xie, Parul Verma, Jonathan Kim, Virginia Liu, Ye Wu, Pew-Thian Yap, Srikantan Nagarajan, Ashish Raj
Comments: 58 pages, 6 figures, 18 supplementary figures
Subjects: Neurons and Cognition (q-bio.NC)
[24]  arXiv:2405.02381 [pdf, ps, other]
Title: Interactions between eagles and semidomestic reindeer: lessons learned from field surveys and deterrents
Authors: Aemilius Johannes van der Meiden, Andres Lopez-Peinado, Peter Sunesson, Christian Emilsson, Navinder J Singh
Comments: 17 pages, 4 Figures, 1 Table
Subjects: Populations and Evolution (q-bio.PE)
[25]  arXiv:2405.02379 [pdf, other]
Title: Modelling the Stochastic Importation Dynamics and Establishment of Novel Pathogenic Strains using a General Branching Processes Framework
Authors: Jacob Curran-Sebastian, Frederik Mølkjær Andersen, Samir Bhatt
Subjects: Populations and Evolution (q-bio.PE); Probability (math.PR); Quantitative Methods (q-bio.QM)
[ total of 78 entries: 1-25 | 26-50 | 51-75 | 76-78 ]
[ showing 25 entries per page: fewer | more | all ]

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